View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9263_low_31 (Length: 303)
Name: NF9263_low_31
Description: NF9263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9263_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 290
Target Start/End: Complemental strand, 33927185 - 33926915
Alignment:
| Q |
20 |
tcaactcgccgattcaactcgtcctgactcagcgacggttctttcctcaccggagaaacactcttctccataccggaaaacgcatccgatttcttcatca |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33927185 |
tcaactcgccgattcaactcgtcctgactcagcgacggttctttcctcaccggagaagtactcttctccataccggaaaacgtatccgatttcttcatca |
33927086 |
T |
|
| Q |
120 |
ccggaccacttcctccgccgacaccgccgttcaaatccgccaacggcacgccgttacgacgtggctgtgattcaaacgtctccgattttttcaaatgcct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33927085 |
ccggaccacttcctccgccgacaccgccgttcaaatccgctaacggcacgccgttacgacgtggctgtgattcaaacgtctccgattttttcaaatgcct |
33926986 |
T |
|
| Q |
220 |
gtttaacggcatcgctcttccttccgttatcgtcttccatgtactctccaatgtttcctgcttcttcgtct |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33926985 |
gtttaacggcatcgctcttccttccgttatcgtcttccacgtactctccaatgtttcctgcttcttcgtct |
33926915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 6386454 - 6386338
Alignment:
| Q |
20 |
tcaactcgccgattcaactcgtcctgactcagcgacggttctttcctcaccggagaaacactcttctccataccggaaaacgcatccgatttcttcatca |
119 |
Q |
| |
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||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||| ||| |||||||| |||||||||||||||| |
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| T |
6386454 |
tcaactcgctgattcaactcgtcctgactcagtgacggttctttcctcacaagagaaacacttttctccctactggaaaacgtctccgatttcttcatca |
6386355 |
T |
|
| Q |
120 |
ccggaccacttcctccg |
136 |
Q |
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| |||||||| |||||| |
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| T |
6386354 |
ctggaccactgcctccg |
6386338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 32 - 134
Target Start/End: Complemental strand, 44141165 - 44141063
Alignment:
| Q |
32 |
ttcaactcgtcctgactcagcgacggttctttcctcaccggagaaacactcttctccataccggaaaacgcatccgatttcttcatcaccggaccacttc |
131 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | | |||||||| || ||||||||||||||||||||||| | |
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| T |
44141165 |
ttcaactcgtcctgactcagtgacggttctttcctcaccggagaaacactcttctccctgctggaaaacgtctctgatttcttcatcaccggaccactgc |
44141066 |
T |
|
| Q |
132 |
ctc |
134 |
Q |
| |
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||| |
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|
| T |
44141065 |
ctc |
44141063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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