View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9263_low_40 (Length: 276)
Name: NF9263_low_40
Description: NF9263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9263_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 9017381 - 9017543
Alignment:
| Q |
1 |
tgcatcaaaacataaaacaattttaaaaattaaattaaagcatagtaacaactattctaacttatataggatgtatcaaaacatatgcatgcatttacat |
100 |
Q |
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| T |
9017381 |
tgcatcaaaacataaa-caattttaaaaaataaattaaagcatagtaacaactattctaacttatattggatgtatcaaaacatatgcatacatttacat |
9017479 |
T |
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| Q |
101 |
attgggttagagatatcaaattaaaagtattatgtgagaaatttcagtaggcttgagccaagtt |
164 |
Q |
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| T |
9017480 |
attgggttagagatatcaaattaaaagtattatgtgagaaatttcattaggcttgagccaagtt |
9017543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 150 - 259
Target Start/End: Original strand, 9017568 - 9017677
Alignment:
| Q |
150 |
ggcttgagccaagttacagtttacacttgttgccatctgaaagtgataaaatgattatataaatgattttaaaaagttataaaaaccaactttatatatc |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9017568 |
ggcttgagccaagttacagtttacacttgttgccatctgaaagtgataaaatgaggatataaatgattttaaaaagttataaaaaccaactttatatatc |
9017667 |
T |
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| Q |
250 |
atcatcataa |
259 |
Q |
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| T |
9017668 |
atcatcataa |
9017677 |
T |
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