View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9263_low_44 (Length: 257)
Name: NF9263_low_44
Description: NF9263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9263_low_44 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 29075193 - 29075397
Alignment:
| Q |
17 |
agataattatagacattaatccaatagatgttataattaagtcttaaaatgcataacaagaagagtccaaaacaaagaagagtccaaaacaaatgcatgc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29075193 |
agataattatagacattaatccaatagatgttataattaagtctaaaaatgcataacaaga-----------------agagtccaaaacaaatgcatgc |
29075275 |
T |
|
| Q |
117 |
ataattaatttcttagttattctttccaaagtgcattcatccatggaattttagtgggtgcacacggttaacatgtcaaattaccactcccttggataat |
216 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29075276 |
ataattaatttcttagtcattctttccaaagtgcattcatccatggaattttagtgggtgcacacggttaacatgtcaaattaccactcccttggataat |
29075375 |
T |
|
| Q |
217 |
caatgattagtatgattatgtc |
238 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
29075376 |
caatgattagtatgattatgtc |
29075397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University