View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9263_low_47 (Length: 249)
Name: NF9263_low_47
Description: NF9263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9263_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 36300533 - 36300772
Alignment:
| Q |
1 |
aattgtcccatgaaaattagattttatgctgcttaaacagttcagtgtttgacctgcaaagcaagggtctctaatcatttttggaaatttaatagatgct |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36300533 |
aattgttccatgaaaattagattttatgctgcttaaacagttcagtgtttgacctgcaaagcaagggtctctaatcatttttggaaatttaatagatgct |
36300632 |
T |
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| Q |
101 |
atgaaaaaggatttcaatcatcatagcataaaaggttatctgatgcatgataaatgtcatattgaaacaatctaagcatttggattcgtgctgcaataat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36300633 |
atgaaaaaggatttcaatcatcatagcataaaaggttatctgatgtatgataaatgtcatattgaaacaatctaagcatttggattcgtgctgcaataat |
36300732 |
T |
|
| Q |
201 |
ctgacatatatggaatactaaattctttccatagtctctg |
240 |
Q |
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| T |
36300733 |
ctgacatatatggaatactaaattctttccatagtctctg |
36300772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 34988896 - 34988992
Alignment:
| Q |
1 |
aattgtcccatgaaaattagattttatgctgcttaaacagttcagtgtttgacctgcaaagcaagggtctctaatcatttttggaaatttaatagat |
97 |
Q |
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|||||||||||||||| ||||| || |||||| ||||||||||||||||||||||||||||||||||||| | ||||||| |||||||| ||||| |
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| T |
34988896 |
aattgtcccatgaaaaatagatcttgtgctgcctaaacagttcagtgtttgacctgcaaagcaagggtctgctaccatttttcgaaatttactagat |
34988992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 35561824 - 35561728
Alignment:
| Q |
1 |
aattgtcccatgaaaattagattttatgctgcttaaacagttcagtgtttgacctgcaaagcaagggtctctaatcatttttggaaatttaatagat |
97 |
Q |
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|||||||||||||||| ||||| || |||||| |||| | ||||||| |||||||||||||||||||||||| | |||||||||||||||| ||||| |
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| T |
35561824 |
aattgtcccatgaaaaatagatcttgtgctgcataaataattcagtgattgacctgcaaagcaagggtctcttaccatttttggaaatttactagat |
35561728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 35543969 - 35543859
Alignment:
| Q |
1 |
aattgtcccatgaaaattagattttatgctgcttaaacagttcagtgtttgacctgcaaagcaagggtctctaatcatttttggaaatttaatagatgct |
100 |
Q |
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|||||||||||||||| ||||| || | |||| |||| | |||| || |||| |||||||||||||||||| | |||||||||||||||||||||| || |
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| T |
35543969 |
aattgtcccatgaaaaatagatcttgttctgcctaaatacttcaatgattgatctgcaaagcaagggtctcataccatttttggaaatttaatagatact |
35543870 |
T |
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| Q |
101 |
atgaaaaagga |
111 |
Q |
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| T |
35543869 |
acgaaaaagga |
35543859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 35530703 - 35530613
Alignment:
| Q |
1 |
aattgtcccatgaaaattagattttatgctgcttaaacagttcagtgtttgacctgcaaagcaagggtctctaatcatttttggaaattta |
91 |
Q |
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|||||||||||||||| ||||| || |||||| |||| | ||||||| ||||||||||| |||||||||||| | ||| ||| |||||||| |
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| T |
35530703 |
aattgtcccatgaaaaatagatcttgtgctgcataaataattcagtgattgacctgcaatgcaagggtctcttaccatgtttagaaattta |
35530613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 35537932 - 35537822
Alignment:
| Q |
1 |
aattgtcccatgaaaattagattttatgctgcttaaacagttcagtgtttgacctgcaaagcaagggtctctaatcatttttggaaatttaatagatgct |
100 |
Q |
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|||||||||||||||| ||||| || | |||| |||| | |||| || ||||||||||||||||||||||| | |||||| |||||||| ||||| || |
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| T |
35537932 |
aattgtcccatgaaaaatagatcttgttctgcctaaatacttcaatgattgacctgcaaagcaagggtctcataccattttccgaaatttactagatact |
35537833 |
T |
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| Q |
101 |
atgaaaaagga |
111 |
Q |
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| T |
35537832 |
acgaaaaagga |
35537822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 51006794 - 51006847
Alignment:
| Q |
18 |
tagattttatgctgcttaaacagttcagtgtttgacctgcaaagcaagggtctc |
71 |
Q |
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|||||||| ||||||||||||||| |||||||||| ||||||| |||| |||| |
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| T |
51006794 |
tagattttgagctgcttaaacagtttagtgtttgacatgcaaagaaaggttctc |
51006847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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