View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9263_low_49 (Length: 242)
Name: NF9263_low_49
Description: NF9263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9263_low_49 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 33381730 - 33381940
Alignment:
| Q |
15 |
tttatattttaaagcatctctctccctttgtgattaaggagattacttatgagatcagccaacacggaagttttcaacttgcaagaaaaataaaactatt |
114 |
Q |
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| T |
33381730 |
tttatattttaaagcatctctctccctttgtgattaaggagattacttatgagatcagccaaaacggaagttttcaacttgcaagaaaaataaaactatt |
33381829 |
T |
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| Q |
115 |
gattttgaaagaagaaatcaacaccataaattgttggaggaaaacaataataatgctcaaactgttttgaatattattgtacatatgttgagtgacaaag |
214 |
Q |
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| T |
33381830 |
gattttgaaagaagaaatcaacaccataaattgttggaggaaaacaataataatgctcaaactgttttgaatattattgtacatatgttgagtgacaaag |
33381929 |
T |
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| Q |
215 |
attcaggccaa |
225 |
Q |
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||||||||||| |
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| T |
33381930 |
attcaggccaa |
33381940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 65 - 225
Target Start/End: Complemental strand, 24630485 - 24630325
Alignment:
| Q |
65 |
gagatcagccaacacggaagttttcaacttgcaagaaaaataaaactattgattttgaaagaagaaatcaacaccataaattgttggaggaaaacaataa |
164 |
Q |
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||||||||| |||| |||||| |||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24630485 |
gagatcagcaaacatggaagtcttcaacctgcaagaaaaataaaagtattgattttgtaagaagaaatcaacaccataaattgttggaggaaaacaataa |
24630386 |
T |
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| Q |
165 |
taatgctcaaactgttttgaatattattgtacatatgttgagtgacaaagattcaggccaa |
225 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
24630385 |
taatgctcaaacagttttgaatattattgtacatatgttgagtgacaaagagttaggccaa |
24630325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 33404407 - 33404443
Alignment:
| Q |
15 |
tttatattttaaagcatctctctccctttgtgattaa |
51 |
Q |
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||||||||||||||||| ||||||| ||||||||||| |
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| T |
33404407 |
tttatattttaaagcatatctctccatttgtgattaa |
33404443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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