View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9263_low_5 (Length: 588)
Name: NF9263_low_5
Description: NF9263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9263_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 11 - 573
Target Start/End: Complemental strand, 42486217 - 42485655
Alignment:
| Q |
11 |
agattattctagtgagacatgtcatcgtgatcaagatggtaaatggtcctccaaacttctcaaagagtgtgcaatagcaatatctaatagagactcatca |
110 |
Q |
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| T |
42486217 |
agataattctagtgagacatgtcatcgtgatcaagatggtaaatggtcctccaaacttctcaaagagtgtgcaatagcaatatctaatagagactcatca |
42486118 |
T |
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| Q |
111 |
aaaatccaccatcttctttggatgttaaacgagttatcttcaccttatggagatattgatcaaaaactagcttcatattttctacaagctctattttcca |
210 |
Q |
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| T |
42486117 |
aaaatccaccatcttctttggatgttaaacgagttatcttcaccttatggagatattgatcaaaaactagcttcatattttctacaagctctattttcca |
42486018 |
T |
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| Q |
211 |
aggcaacacaatccggtcacaagtgttacaaaacactatcttcaatcgcttacaaaaaccactcttttgattcagcaagaaagttaatactcaagtttca |
310 |
Q |
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| T |
42486017 |
aggcaacacaatccggtcacaagtgttacaaaacactatcttcaatcgcttacaaaagccactcttttgattcagcaagaaagttaatactcaagtttca |
42485918 |
T |
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| Q |
311 |
agaggtaagtccatggacaacttttggacacgtagcatcaaatggtgctattttagaagctttagaaggagagaaaaaacttcacataattgatattagc |
410 |
Q |
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| T |
42485917 |
agaggtaagtccatggacaacttttggacacgtagcatcaaatggtgctattttagaagctttagatggagagaaaaaacttcacataattgatattagc |
42485818 |
T |
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| Q |
411 |
aacaccctttgtactcaatggcctactcttctagaagctttggcaacaagaaatgatgaaactcctcaccttaagctcacaattgttgtcacaaataata |
510 |
Q |
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| T |
42485817 |
aacaccctttgtactcaatggcctactcttctagaagctttggcaacaagaaatgatgaaactcctcaccttaagctcacaattgttgtcacaaataata |
42485718 |
T |
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| Q |
511 |
gttctagtgttgttgttatgaaggaagttggtcaaagaatggagaaatttgctaggcttatgg |
573 |
Q |
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| T |
42485717 |
gttctagtgttgttgttatgaaggaagttggtcaaagaatggagaaatttgctaggcttatgg |
42485655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 303 - 454
Target Start/End: Original strand, 39987507 - 39987658
Alignment:
| Q |
303 |
aagtttcaagaggtaagtccatggacaacttttggacacgtagcatcaaatggtgctattttagaagctttagaaggagagaaaaaacttcacataattg |
402 |
Q |
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| T |
39987507 |
aagttccaagaagttagtccatggacaacgtttggacacgtggcagctaacggtgctatcttagaagcattggaaggtaaccctaaacttcacataattg |
39987606 |
T |
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| Q |
403 |
atattagcaacaccctttgtactcaatggcctactcttctagaagctttggc |
454 |
Q |
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| T |
39987607 |
atattagcaacacttattgcactcaatggccaacactcctcgaagcgttggc |
39987658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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