View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9263_low_56 (Length: 226)

Name: NF9263_low_56
Description: NF9263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9263_low_56
NF9263_low_56
[»] chr4 (2 HSPs)
chr4 (36-218)||(11016756-11016937)
chr4 (152-186)||(12068027-12068061)
[»] chr7 (2 HSPs)
chr7 (45-126)||(19112588-19112669)
chr7 (60-113)||(47609149-47609202)
[»] chr3 (4 HSPs)
chr3 (37-117)||(36903613-36903693)
chr3 (45-126)||(19155025-19155106)
chr3 (63-117)||(20909234-20909287)
chr3 (154-188)||(26786131-26786165)
[»] chr5 (1 HSPs)
chr5 (29-117)||(13876757-13876845)
[»] chr2 (2 HSPs)
chr2 (54-126)||(33765026-33765098)
chr2 (157-186)||(15953967-15953996)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 36 - 218
Target Start/End: Complemental strand, 11016937 - 11016756
Alignment:
Q  36 atttggtattgcggcatatcaagcaaaatcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcataattttcaagttgatccaaacac 135  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||    
T  11016937 atttggtattgcgacatatcaagcaaaatcacgttcaaaaatcacatcaaagcaaaagctaatatttgtagcttcataattttcaagttgatcc-aacac 11016839  T
Q  136 tcacataatcttttaaaaaatccatttggattggtctgatggtgttgacttagaacacctgatgatctcatctctgcttctcc 218  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  11016838 tcacataatcttttaaaaaatctatttggattggtctgatggtgttgacttagaacacctgatgatctcatctttgattctcc 11016756  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 186
Target Start/End: Original strand, 12068027 - 12068061
Alignment:
Q  152 aaaatccatttggattggtctgatggtgttgactt 186  Q
    |||||||||||||||||||||||| ||||||||||    
T  12068027 aaaatccatttggattggtctgatcgtgttgactt 12068061  T

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Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 19112669 - 19112588
Alignment:
Q  45 tgcggcatatcaagcaaaatcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcataattttcaagttga 126  Q
    ||||||| |||||| ||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  19112669 tgcggcacatcaaggaaaatcacgttaaaaaatcacatcaaagcaaaagctcatatttgtagcttcataatttccaagttga 19112588  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 47609202 - 47609149
Alignment:
Q  60 aaaatcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcata 113  Q
    ||||||||||| |||| |||||||||||||||||||| || |||||||||||||    
T  47609202 aaaatcacgttaaaaattcacatcaaagcaaaagcttgtatttgtagcttcata 47609149  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 36903613 - 36903693
Alignment:
Q  37 tttggtattgcggcatatcaagcaaaatcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcataattt 117  Q
    ||||||||| ||| | ||||| ||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||    
T  36903613 tttggtattacggtacatcaaacaaaatcacgttagaaaatcacatcaaagcaaaagcttatatttgtagcttcataattt 36903693  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 19155025 - 19155106
Alignment:
Q  45 tgcggcatatcaagcaaaatcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcataattttcaagttga 126  Q
    |||| ||| ||||| ||||| ||||| |||| |||||||||||||||||||||||||| |||||||||| ||| || |||||    
T  19155025 tgcgacatttcaagaaaaattacgttaaaaattcacatcaaagcaaaagcttataattatagcttcatagtttccacgttga 19155106  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 20909287 - 20909234
Alignment:
Q  63 atcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcataattt 117  Q
    |||||||| |||||||||||||||| ||||||||||| ||||||| |||||||||    
T  20909287 atcacgttaaaaaatcacatcaaaggaaaagcttatatttgtagc-tcataattt 20909234  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 188
Target Start/End: Complemental strand, 26786165 - 26786131
Alignment:
Q  154 aatccatttggattggtctgatggtgttgacttag 188  Q
    ||||||||||||||||||||||||| |||||||||    
T  26786165 aatccatttggattggtctgatggtattgacttag 26786131  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 13876757 - 13876845
Alignment:
Q  29 atggcctatttggtattgcggcatatcaagcaaaatcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcataattt 117  Q
    ||||||| |||| ||||| || | ||||| |||||||||||| |||||||| || |||||||||||||||| ||||| |||||||||||    
T  13876757 atggcctgtttgatattgtggtacatcaaacaaaatcacgttaaaaaatcatataaaagcaaaagcttatatttgtaacttcataattt 13876845  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 33765026 - 33765098
Alignment:
Q  54 tcaagcaaaatcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcataattttcaagttga 126  Q
    ||||| ||||| || || |||| ||||||||||||||||||| | | ||||||||||||| |||||| |||||    
T  33765026 tcaagtaaaattactttaaaaattcacatcaaagcaaaagctcagatttgtagcttcatagttttcacgttga 33765098  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 186
Target Start/End: Original strand, 15953967 - 15953996
Alignment:
Q  157 ccatttggattggtctgatggtgttgactt 186  Q
    ||||||||||||||||||||||||||||||    
T  15953967 ccatttggattggtctgatggtgttgactt 15953996  T

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