View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9263_low_7 (Length: 583)

Name: NF9263_low_7
Description: NF9263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9263_low_7
NF9263_low_7
[»] scaffold0014 (2 HSPs)
scaffold0014 (92-401)||(32608-32917)
scaffold0014 (15-62)||(32947-32994)
[»] chr3 (8 HSPs)
chr3 (92-371)||(19766049-19766328)
chr3 (97-248)||(17681936-17682083)
chr3 (1-62)||(17682114-17682175)
chr3 (1-62)||(19766356-19766417)
chr3 (360-403)||(11394009-11394052)
chr3 (310-368)||(31687908-31687966)
chr3 (360-400)||(52130783-52130823)
chr3 (360-394)||(46233983-46234017)
[»] chr4 (9 HSPs)
chr4 (310-394)||(26720237-26720321)
chr4 (360-402)||(41810163-41810205)
chr4 (360-403)||(32651290-32651333)
chr4 (360-403)||(38467731-38467774)
chr4 (310-360)||(14586815-14586865)
chr4 (268-367)||(10195692-10195791)
chr4 (374-403)||(48969137-48969166)
chr4 (360-392)||(3649873-3649905)
chr4 (1-41)||(37618724-37618764)
[»] chr2 (7 HSPs)
chr2 (229-360)||(32277084-32277216)
chr2 (499-555)||(17855695-17855752)
chr2 (360-399)||(7161811-7161850)
chr2 (1-55)||(32277363-32277417)
chr2 (364-403)||(997811-997850)
chr2 (360-395)||(4453777-4453812)
chr2 (360-395)||(9208569-9208604)
[»] scaffold0003 (2 HSPs)
scaffold0003 (310-399)||(43150-43239)
scaffold0003 (310-371)||(36966-37027)
[»] chr6 (4 HSPs)
chr6 (310-399)||(27444122-27444211)
chr6 (360-408)||(31444757-31444805)
chr6 (325-371)||(33054136-33054182)
chr6 (364-400)||(33054187-33054223)
[»] scaffold0152 (1 HSPs)
scaffold0152 (310-371)||(10230-10291)
[»] scaffold0005 (1 HSPs)
scaffold0005 (310-360)||(230509-230559)
[»] chr8 (2 HSPs)
chr8 (360-394)||(35348991-35349025)
chr8 (360-394)||(44663703-44663737)
[»] chr1 (4 HSPs)
chr1 (1-41)||(50975557-50975597)
chr1 (360-403)||(17726024-17726066)
chr1 (359-394)||(31771393-31771428)
chr1 (360-395)||(32440669-32440704)
[»] chr7 (1 HSPs)
chr7 (364-399)||(16262706-16262741)
[»] scaffold0352 (1 HSPs)
scaffold0352 (247-294)||(16740-16788)


Alignment Details
Target: scaffold0014 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 92 - 401
Target Start/End: Complemental strand, 32917 - 32608
Alignment:
Q  92 atgacaaaaggttgatcatgaatcttggagatgaaacgggaacagataaagtggcatggatggttggaataagagaatgaatgaattgaaaatgaatact 191  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32917 atgacaaaaggttgatcatgaatcttgaagatgaaaagggaacagataaagtggcatggatggttggaataagagaatgaatgaattgaaaatgaatact 32818  T
Q  192 ttggaaaatgaaacgcgttggaagatgatacacgttgaatttgaattatgtatgggatgtgtgcaagccagcattaagatttgatcaagggctgatatgt 291  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  32817 ttggaaaatgaaacgctttggaagatgatacacgttgaatttgaattatgtatgggatgtgtgcaagacagcgttaagatttgatcaagggctgatatgt 32718  T
Q  292 taagcttgtttaatgacatagatccaacggcctggattgtttggcgcctaaaaaagtaggattagggtttggagtgttaactaggattagaaataagtta 391  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32717 taagcttgtctaatgacatagatccaacgggctggattgtttggcgcctaaaaaagtaggattagggtttggagtgttaactaggattagaaataagtta 32618  T
Q  392 gattagatta 401  Q
    ||||||||||    
T  32617 gattagatta 32608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 32994 - 32947
Alignment:
Q  15 catgggagagattgaaattttcttcatgtatggttatggttcattggc 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32994 catgggagagattgaaattttcttcatgtatggttatggttcattggc 32947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 260; Significance: 1e-144; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 92 - 371
Target Start/End: Complemental strand, 19766328 - 19766049
Alignment:
Q  92 atgacaaaaggttgatcatgaatcttggagatgaaacgggaacagataaagtggcatggatggttggaataagagaatgaatgaattgaaaatgaatact 191  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19766328 atgacaaaagtttgatcatgaatcttggagatgaaaagggaacagataaagtggcatggatggttggaataagagaatgaatgaattgaaaatgaatact 19766229  T
Q  192 ttggaaaatgaaacgcgttggaagatgatacacgttgaatttgaattatgtatgggatgtgtgcaagccagcattaagatttgatcaagggctgatatgt 291  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19766228 ttggaaaatgaaacgcgttggaagatgatagacgttgaatttgaattatgtatgggacgtgtgcaagccagcattaagatttgatcaagggctgatatgt 19766129  T
Q  292 taagcttgtttaatgacatagatccaacggcctggattgtttggcgcctaaaaaagtaggattagggtttggagtgttaa 371  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19766128 taagcttgtctaatgacatagatccaacggcctggattgtttggcgcctaaaaaagtaggattagggtttggagtgttaa 19766049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 97 - 248
Target Start/End: Complemental strand, 17682083 - 17681936
Alignment:
Q  97 aaaaggttgatcatgaatcttggagatgaaacgggaacagataaagtggcatggatggttggaataagagaatgaatgaattgaaaatgaatactttgga 196  Q
    |||||||||| |||||||||  ||||||||| ||||||| || || ||| |||||||||||||||||||||||||||    |||||||||||||||||||    
T  17682083 aaaaggttgaacatgaatctaagagatgaaaagggaacaaatgaattggtatggatggttggaataagagaatgaat----tgaaaatgaatactttgga 17681988  T
Q  197 aaatgaaacgcgttggaagatgatacacgttgaatttgaattatgtatggga 248  Q
    || ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17681987 aagtgaaacgcgttggaagatgatacaccttgaatttgaattatgtatggga 17681936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 17682175 - 17682114
Alignment:
Q  1 gaaagtggaaaagacatgggagagattgaaattttcttcatgtatggttatggttcattggc 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17682175 gaaagtggaaaagacatgggagagattgaaattttcttcatgtatggttatggttcattggc 17682114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 19766417 - 19766356
Alignment:
Q  1 gaaagtggaaaagacatgggagagattgaaattttcttcatgtatggttatggttcattggc 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19766417 gaaagtggaaaagacatgggagagattgaaattttcttcatgtatggttatggttcattggc 19766356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 360 - 403
Target Start/End: Complemental strand, 11394052 - 11394009
Alignment:
Q  360 ttggagtgttaactaggattagaaataagttagattagattaga 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  11394052 ttggagtgttaactaggattagaaataagttagattagattaga 11394009  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 310 - 368
Target Start/End: Complemental strand, 31687966 - 31687908
Alignment:
Q  310 tagatccaacggcctggattgtttggcgcctaaaaaagtaggattagggtttggagtgt 368  Q
    ||||||||| |||  |||||||||||||||||||||||||| |||||||||||||||||    
T  31687966 tagatccaagggctaggattgtttggcgcctaaaaaagtagaattagggtttggagtgt 31687908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 52130823 - 52130783
Alignment:
Q  360 ttggagtgttaactaggattagaaataagttagattagatt 400  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  52130823 ttggagtgttacctaggattagaaataagttagactagatt 52130783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 394
Target Start/End: Original strand, 46233983 - 46234017
Alignment:
Q  360 ttggagtgttaactaggattagaaataagttagat 394  Q
    |||||||||||||||||||||| ||||||||||||    
T  46233983 ttggagtgttaactaggattaggaataagttagat 46234017  T

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Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 310 - 394
Target Start/End: Complemental strand, 26720321 - 26720237
Alignment:
Q  310 tagatccaacggcctggattgtttggcgcctaaaaaagtaggattagggtttggagtgttaactaggattagaaataagttagat 394  Q
    ||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26720321 tagatccaagggctaggattgtttggcgcctaaaaaagtaggattagggtttggagtgttaactaggattaggaataagttagat 26720237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 360 - 402
Target Start/End: Complemental strand, 41810205 - 41810163
Alignment:
Q  360 ttggagtgttaactaggattagaaataagttagattagattag 402  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  41810205 ttggagtgttaactaggattagaaataagttagattagattag 41810163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 403
Target Start/End: Original strand, 32651290 - 32651333
Alignment:
Q  360 ttggagtgttaactaggattagaaataagttagattagattaga 403  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  32651290 ttggagtgttaactaggattaggaataagttagattagattaga 32651333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 403
Target Start/End: Original strand, 38467731 - 38467774
Alignment:
Q  360 ttggagtgttaactaggattagaaataagttagattagattaga 403  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  38467731 ttggagtgttaactaggattataaataagttagattagattaga 38467774  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 360
Target Start/End: Original strand, 14586815 - 14586865
Alignment:
Q  310 tagatccaacggcctggattgtttggcgcctaaaaaagtaggattagggtt 360  Q
    ||||||||| |||  ||||||||||||||||||||||||||| ||||||||    
T  14586815 tagatccaagggctaggattgtttggcgcctaaaaaagtaggtttagggtt 14586865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 367
Target Start/End: Complemental strand, 10195791 - 10195692
Alignment:
Q  268 agatttgatcaagggctgatatgttaagcttgtttaatgacatagatccaacggcctggattgtttggcgcctaaaaaagtaggattagggtttggagtg 367  Q
    ||||||||||||||| ||||||||||| |  |  || |||||  ||||||||  |||||||| |||||| |||||| || |||| ||||||||| |||||    
T  10195791 agatttgatcaagggatgatatgttaaccgcgcctagtgacagcgatccaacatcctggattctttggcacctaaataattaggtttagggtttagagtg 10195692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 403
Target Start/End: Original strand, 48969137 - 48969166
Alignment:
Q  374 aggattagaaataagttagattagattaga 403  Q
    ||||||||||||||||||||||||||||||    
T  48969137 aggattagaaataagttagattagattaga 48969166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 360 - 392
Target Start/End: Complemental strand, 3649905 - 3649873
Alignment:
Q  360 ttggagtgttaactaggattagaaataagttag 392  Q
    |||||||||||||||||||||| ||||||||||    
T  3649905 ttggagtgttaactaggattaggaataagttag 3649873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 37618724 - 37618764
Alignment:
Q  1 gaaagtggaaaagacatgggagagattgaaattttcttcat 41  Q
    |||||| |||||||||||| ||||| |||||||||||||||    
T  37618724 gaaagtagaaaagacatggaagagagtgaaattttcttcat 37618764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 229 - 360
Target Start/End: Complemental strand, 32277216 - 32277084
Alignment:
Q  229 aatttgaattatgta-tgggatgtgtgcaagccagcattaagatttgatcaagggctgatatgttaagcttgtttaatgacatagatccaacggcctgga 327  Q
    ||||||||||||||| || ||||||||||||  |||| ||| ||||||||||||||||||||||||||   |  |||||||||||||||||||| |||||    
T  32277216 aatttgaattatgtaatgtgatgtgtgcaagaaagcactaaaatttgatcaagggctgatatgttaagtgcgcctaatgacatagatccaacggtctgga 32277117  T
Q  328 ttgtttggcgcctaaaaaagtaggattagggtt 360  Q
    |||||||||||| ||| || |||||||||||||    
T  32277116 ttgtttggcgccaaaataattaggattagggtt 32277084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 499 - 555
Target Start/End: Original strand, 17855695 - 17855752
Alignment:
Q  499 acttatacctacggctgtttt-tgttatgatatacctacggatttgttccatcgctat 555  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17855695 acttatacctacggctgttttttgttatgatatacctacggatttgttccatcgctat 17855752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 399
Target Start/End: Complemental strand, 7161850 - 7161811
Alignment:
Q  360 ttggagtgttaactaggattagaaataagttagattagat 399  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7161850 ttggagtgttaactaggattagaaataagttagattagat 7161811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 32277417 - 32277363
Alignment:
Q  1 gaaagtggaaaagacatgggagagattgaaattttcttcatgtatggttatggtt 55  Q
    ||||||||||||||||||||| | ||| |||||| ||||||||||||||||||||    
T  32277417 gaaagtggaaaagacatgggacaaattaaaatttccttcatgtatggttatggtt 32277363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 364 - 403
Target Start/End: Complemental strand, 997850 - 997811
Alignment:
Q  364 agtgttaactaggattagaaataagttagattagattaga 403  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  997850 agtgttaactaggattaggaataagttagattagattaga 997811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 395
Target Start/End: Complemental strand, 4453812 - 4453777
Alignment:
Q  360 ttggagtgttaactaggattagaaataagttagatt 395  Q
    |||||||||||||||||||||| |||||||||||||    
T  4453812 ttggagtgttaactaggattaggaataagttagatt 4453777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 395
Target Start/End: Complemental strand, 9208604 - 9208569
Alignment:
Q  360 ttggagtgttaactaggattagaaataagttagatt 395  Q
    |||||||||||||||||||||| |||||||||||||    
T  9208604 ttggagtgttaactaggattaggaataagttagatt 9208569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 310 - 399
Target Start/End: Original strand, 43150 - 43239
Alignment:
Q  310 tagatccaacggcctggattgtttggcgcctaaaaaagtaggattagggtttggagtgttaactaggattagaaataagttagattagat 399  Q
    ||||||||| |||  |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||    
T  43150 tagatccaagggctaggattgtttggcgcctaaaaaagtagaattagggtttggagtgttaactacgattaggaataagttagattagat 43239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 310 - 371
Target Start/End: Original strand, 36966 - 37027
Alignment:
Q  310 tagatccaacggcctggattgtttggcgcctaaaaaagtaggattagggtttggagtgttaa 371  Q
    ||||||||| |||  ||||||||||||||||||||||| || |||||| |||| ||||||||    
T  36966 tagatccaagggctaggattgtttggcgcctaaaaaagaagaattaggatttgaagtgttaa 37027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 7e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 310 - 399
Target Start/End: Complemental strand, 27444211 - 27444122
Alignment:
Q  310 tagatccaacggcctggattgtttggcgcctaaaaaagtaggattagggtttggagtgttaactaggattagaaataagttagattagat 399  Q
    ||||||||| |||  |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||    
T  27444211 tagatccaagggctaggattgtttggcgcctaaaaaagtagaattagggtttggagtgttaactacgattaggaataagttagattagat 27444122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 360 - 408
Target Start/End: Complemental strand, 31444805 - 31444757
Alignment:
Q  360 ttggagtgttaactaggattagaaataagttagattagattagaaataa 408  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  31444805 ttggagtgttaactaggattaggaataagttagattagattagatataa 31444757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 371
Target Start/End: Original strand, 33054136 - 33054182
Alignment:
Q  325 ggattgtttggcgcctaaaaaagtaggattagggtttggagtgttaa 371  Q
    |||||| |||||||||||||||||||| |||||||||  ||||||||    
T  33054136 ggattgattggcgcctaaaaaagtaggtttagggttttaagtgttaa 33054182  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 364 - 400
Target Start/End: Original strand, 33054187 - 33054223
Alignment:
Q  364 agtgttaactaggattagaaataagttagattagatt 400  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  33054187 agtgttaattaggattaggaataagttagattagatt 33054223  T

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Target: scaffold0152 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 310 - 371
Target Start/End: Complemental strand, 10291 - 10230
Alignment:
Q  310 tagatccaacggcctggattgtttggcgcctaaaaaagtaggattagggtttggagtgttaa 371  Q
    ||||||||| |||  |||||||||||||||||||||||||| ||||||||||||||||||||    
T  10291 tagatccaagggctaggattgtttggcgcctaaaaaagtagaattagggtttggagtgttaa 10230  T

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Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 360
Target Start/End: Complemental strand, 230559 - 230509
Alignment:
Q  310 tagatccaacggcctggattgtttggcgcctaaaaaagtaggattagggtt 360  Q
    ||||||||| |||  ||||||||||||||||||||||||||| ||||||||    
T  230559 tagatccaagggctaggattgtttggcgcctaaaaaagtaggtttagggtt 230509  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 394
Target Start/End: Complemental strand, 35349025 - 35348991
Alignment:
Q  360 ttggagtgttaactaggattagaaataagttagat 394  Q
    |||||||||||||||||||||||||||||||||||    
T  35349025 ttggagtgttaactaggattagaaataagttagat 35348991  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 394
Target Start/End: Original strand, 44663703 - 44663737
Alignment:
Q  360 ttggagtgttaactaggattagaaataagttagat 394  Q
    |||||||||||||||||||||| ||||||||||||    
T  44663703 ttggagtgttaactaggattaggaataagttagat 44663737  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 50975597 - 50975557
Alignment:
Q  1 gaaagtggaaaagacatgggagagattgaaattttcttcat 41  Q
    ||||||||||||||||||| ||||| |||||||||||||||    
T  50975597 gaaagtggaaaagacatggaagagagtgaaattttcttcat 50975557  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 403
Target Start/End: Complemental strand, 17726066 - 17726024
Alignment:
Q  360 ttggagtgttaactaggattagaaataagttagattagattaga 403  Q
    |||||||||||||||||||||| ||||| |||||||||||||||    
T  17726066 ttggagtgttaactaggattaggaataa-ttagattagattaga 17726024  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 394
Target Start/End: Original strand, 31771393 - 31771428
Alignment:
Q  359 tttggagtgttaactaggattagaaataagttagat 394  Q
    ||||||||||||||||||||||| ||||||||||||    
T  31771393 tttggagtgttaactaggattaggaataagttagat 31771428  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 395
Target Start/End: Original strand, 32440669 - 32440704
Alignment:
Q  360 ttggagtgttaactaggattagaaataagttagatt 395  Q
    |||||||||||||||||||||| |||||||||||||    
T  32440669 ttggagtgttaactaggattaggaataagttagatt 32440704  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 399
Target Start/End: Original strand, 16262706 - 16262741
Alignment:
Q  364 agtgttaactaggattagaaataagttagattagat 399  Q
    |||||||||||||||||| |||||||||||||||||    
T  16262706 agtgttaactaggattaggaataagttagattagat 16262741  T

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Target: scaffold0352 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 16740 - 16788
Alignment:
Q  247 gatgtgtgcaagccagcattaagatttgatc-aagggctgatatgttaa 294  Q
    |||||||| |||||||||||||||| ||||| || ||||||||||||||    
T  16740 gatgtgtgtaagccagcattaagatatgatcaaatggctgatatgttaa 16788  T

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