View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9263_low_9 (Length: 533)
Name: NF9263_low_9
Description: NF9263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9263_low_9 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 447; Significance: 0; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 44 - 518
Target Start/End: Original strand, 23257323 - 23257797
Alignment:
| Q |
44 |
aagtcctacaaaagataagaataataagacaagatagactatatttggaaattgcaaattattttctttcatatataataaaagtcagatgcactttaag |
143 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23257323 |
aagtcctacaaaagagaagaaaaataagacaagatagactatatttggaaattgcaaattatgttctttcatatataataaaagtcagatgcactttaag |
23257422 |
T |
|
| Q |
144 |
cttgattagtgatttaataatccacataaaagctataaagagaaactccttttcaatttcaacctatgtatatgcagaatttatgctaccaattaaaaag |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23257423 |
cttgattagtgatttaataatccacataaaagctataaagagaaactccttttcaatttcaacctatgtatatgcagaatttatgctaccaattaaaaag |
23257522 |
T |
|
| Q |
244 |
gttgtagtatagacatttcctattctacaatccaaaaataaaattaaaccaaacacataaagtttagaagttccatagtgatacctcatcatcttgaaag |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23257523 |
gttgtagtatagacatttcctattctacaatccaaaaataaaattaaaccaaacacattaagtttagaagttccatagtgatacctcatcatcttgaaag |
23257622 |
T |
|
| Q |
344 |
tcttgtacatgaatatcttcatactgatcatgatactcaaagctatgcgtaggggacattagtgccatattcctcaacaattctggcatattcaacattt |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23257623 |
tcttgtacatgaatatcttcatactgatcatgatactcaaagctatgtgtaggggacattagtgccatattcctcaacaattctggcatattcaacattt |
23257722 |
T |
|
| Q |
444 |
cctgctcttcttcgacttccacacaaaacatattcaactcctttgtggccgcgacaggtacgacggtgtcaatat |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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|
| T |
23257723 |
cctgctcttcttcgacttccacacaaaacatattcaactcctttgtggccacgacaggtactacggtgtcaatat |
23257797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 103 - 516
Target Start/End: Original strand, 23251405 - 23251819
Alignment:
| Q |
103 |
tattttctttcatatataataaaag---tcagatgcactttaagcttgattagtgatttaataatccacataaaagctataaagagaaactccttttcaa |
199 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||| ||||||||||||||||| | ||| |||||||||| |
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|
| T |
23251405 |
tattttctttcatatataataaaaaggatgagatgcactttacgcttgattagtgatttaataattcacataaaagctataaaaataaattccttttcaa |
23251504 |
T |
|
| Q |
200 |
tttcaacctatgtatatgcagaatttatgctaccaattaaaaaggttgtagtatagacatttcctattctacaatccaaaaataaa-attaaaccaaaca |
298 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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|
| T |
23251505 |
attcaacctatgtatatgcagagtttacgctaccaattcaaacggttgtagtatagacatttcctattctacaatccaaaaataaatgtaaaaccaaatc |
23251604 |
T |
|
| Q |
299 |
cataaagtttagaagttccatagtgatacctcatcatcttgaaagtcttgtacatgaatatcttcatactgatcatgatactcaaagctatgcgtagggg |
398 |
Q |
| |
|
|| || |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||| |
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|
| T |
23251605 |
aattaaatttaaaagttccatagtgatacctcatcatcttgaaagtcttgtatatgaatatcttcatactgatcatgatacccaaagctatgtgtagggg |
23251704 |
T |
|
| Q |
399 |
acattagtgccatattcctcaacaattctggcatattcaacatttcctgctcttcttcgacttccacacaaaacatattcaactcctttgtggccgcgac |
498 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||| ||| ||||||||||||||| |||| ||||||||||| ||||| ||| || | || |
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|
| T |
23251705 |
acattagtgccatattcctccacaactctggcatattcaacacttc---ctcttcttcgacttcaacacgaaacatattcagctcctgtgttgcgacaac |
23251801 |
T |
|
| Q |
499 |
aggtacgacggtgtcaat |
516 |
Q |
| |
|
|| ||| ||||||||||| |
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|
| T |
23251802 |
agctacaacggtgtcaat |
23251819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 110 - 520
Target Start/End: Original strand, 23247001 - 23247411
Alignment:
| Q |
110 |
tttcatatataataaaagtca---gatgcactttaagcttgattagtgatttaataatccacataaaa-gctataaagagaaactccttttcaatttcaa |
205 |
Q |
| |
|
||||||||||||||||||||| |||||||| || ||| |||||||||||||||| || |||||||| |||||||| ||||| ||||||| ||||| || |
|
|
| T |
23247001 |
tttcatatataataaaagtcatgagatgcactatatgctcgattagtgatttaatattc-acataaaaagctataaaaagaaattcctttttaattttaa |
23247099 |
T |
|
| Q |
206 |
cctatgtatatgcagaatttatgctaccaattaaaaaggttgtagtatagacatttcctattctacaatccaaaaataaaattaaaccaaacacataaag |
305 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| ||| |||| || |
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|
| T |
23247100 |
cctatgtatatgcagtatttatgctaccaattaaaaaggttgtagtatagacatttcctatcctacaatccaaaaagaaaagtaaacaaaagacattaaa |
23247199 |
T |
|
| Q |
306 |
tttagaagttccatagtgatacctcatcatcttgaaagtcttgtacatgaatatcttcatactgatcatgatactcaaagctatgcgtaggggacattag |
405 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||| ||||| ||||| | |
|
|
| T |
23247200 |
tttaaaagttccatagtgatacctcatcatcttgaaaatcttgtacatgaatatcgtcatac---tcatgatactcaaagctatgtgtaggtgacatcaa |
23247296 |
T |
|
| Q |
406 |
tgccatattcctcaacaattctggcatattcaacatttcctgctcttcttcgacttccacacaaaacatattcaactcctttgtggccgcgacaggtacg |
505 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||| || ||| || |||||||||||||||||||||| |||||||||||| ||||| |||| |
|
|
| T |
23247297 |
cgccatattcctccacaactctggcatattcaacatttcctcctgttcatcaacttccacacaaaacatattcagctcctttgtggcgacgacatctacg |
23247396 |
T |
|
| Q |
506 |
acggtgtcaatattg |
520 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
23247397 |
atagtgtcaatattg |
23247411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 221 - 492
Target Start/End: Original strand, 23266061 - 23266326
Alignment:
| Q |
221 |
aatttatgctaccaattaaaaaggttgtagtatagacatttcctattctacaatccaaaaataaaattaaaccaaacacataaagtttagaagttccata |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| ||||||||||||||| |
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|
| T |
23266061 |
aatttatgctaccaattaaaaaggttgtagtatagacatttcctattctacaatccaaaaataaagttaaaccaaacaaagaaaatttagaagttccata |
23266160 |
T |
|
| Q |
321 |
gtgatacctcatcatcttgaaagtcttgtacatgaatatcttcatactgatcatgatactcaaagctatgcgtaggggacattagtgccatattcctcaa |
420 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
23266161 |
gtgatacctcatcatcttgaaagtcttgaaaatgaaaatcttcatattgatcatgatactcaaagctatgtgtaggggacattagtgccatattcctcca |
23266260 |
T |
|
| Q |
421 |
caattctggcatattcaacatttcctgctcttcttcgacttccacacaaaacatattcaactcctttgtggc |
492 |
Q |
| |
|
|| || ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23266261 |
aaactccggcatattcaacatttc---ctcttctt---cttccacacaaaacatattcaactcctttgtggc |
23266326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 245 - 481
Target Start/End: Original strand, 23283160 - 23283391
Alignment:
| Q |
245 |
ttgtagtatagacatttcctattctacaatccaaaaataaaattaaa-ccaaacacataaagtttagaagttccatagtgatacctcatcatcttgaaag |
343 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||| |||| ||| |||||| | | || |||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
23283160 |
ttgtagtatagacattttcaattctacaatccaaaaaaaaaaacaaaaccaaactcttcaattttagaagttccatagggatacctcttcatcttgaaag |
23283259 |
T |
|
| Q |
344 |
tcttgtacatgaatatcttcatactgatcatgatactcaaagctatgcgtaggggacattagtgccatattcctcaacaattctggcatattcaacattt |
443 |
Q |
| |
|
||||||| || || || ||||||| ||||| ||| | ||||| ||||||||||||| |||||||||||| ||| |||| ||||||||||| || |
|
|
| T |
23283260 |
tcttgtaaatcaaaattttcatac---tcatg---ctccatactatgtgtaggggacattaacgccatattcctccacatctctgacatattcaacactt |
23283353 |
T |
|
| Q |
444 |
cctgctcttcttcgacttccacacaaaacatattcaac |
481 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
23283354 |
cctcttctttttcgacttccacacaaaacatattcaac |
23283391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 245 - 481
Target Start/End: Original strand, 23289502 - 23289731
Alignment:
| Q |
245 |
ttgtagtatagacatttcctattctacaatccaaa--aataaaattaaaccaaacacataaagtttagaagttccatagtgatacctcatcatcttgaaa |
342 |
Q |
| |
|
|||||||| |||||||| | || ||||||||||| || |||| |||||||||||| | ||||| ||||||||||||| |||||||| ||||||||||| |
|
|
| T |
23289502 |
ttgtagtacagacattttccgttttacaatccaaacaaaaaaaagtaaaccaaacacttcaagttcagaagttccatagcgatacctcttcatcttgaaa |
23289601 |
T |
|
| Q |
343 |
gtcttgtacatgaatatcttcatactgatcatgatactcaaagctatgcgtaggggacattagtgccatattcctcaacaattctggcatattcaacatt |
442 |
Q |
| |
|
|||||||| || ||||||||||| |||| |||||| ||||| ||||||||||||||||||||||| || |||| ||| |||||||||||| | |
|
|
| T |
23289602 |
---ttgtacatcaaaatcttcatact---catg---ctcaaaactatgtgtaggggacattagtgccatatttttccacaactcttgcatattcaacact |
23289692 |
T |
|
| Q |
443 |
tcctgctcttcttcgacttccacacaaaacatattcaac |
481 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
23289693 |
tcctcttctttttcgacttccacacaaaacatattcaac |
23289731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 334 - 437
Target Start/End: Original strand, 23391074 - 23391174
Alignment:
| Q |
334 |
atcttgaaagtcttgtacatgaatatcttcatactgatcatgatactcaaagctatgcgtaggggacattagtgccatattcctcaacaattctggcata |
433 |
Q |
| |
|
||||||||||||||| |||||||||| |||||| | ||| |||| || ||||||| ||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
23391074 |
atcttgaaagtcttgaacatgaatattttcatatt---cattatacccagagctatgtgtaggagacattagtgccatattcctcaacaactctggcatg |
23391170 |
T |
|
| Q |
434 |
ttca |
437 |
Q |
| |
|
|||| |
|
|
| T |
23391171 |
ttca |
23391174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 452
Target Start/End: Original strand, 23593009 - 23593082
Alignment:
| Q |
379 |
ctcaaagctatgcgtaggggacattagtgccatattcctcaacaattctggcatattcaacatttcctgctctt |
452 |
Q |
| |
|
||||| |||||| |||||||||||||| ||||||||||||||| | ||||| || ||||||| ||||| ||||| |
|
|
| T |
23593009 |
ctcaacgctatgtgtaggggacattagagccatattcctcaacgactctggaatgttcaacacttcctcctctt |
23593082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 23265982 - 23266056
Alignment:
| Q |
107 |
ttctttcatatataataaaagtcagatgcactttaagcttgattagtgatttaataatccacataaaagctataaagagaaa |
188 |
Q |
| |
|
||||||||||||||||||||| ||||||| | |||||||||||||||| ||| |||||||||||||| || ||||| |
|
|
| T |
23265982 |
ttctttcatatataataaaag-------cactttatgattgattagtgatttaaaaattcacataaaagctatgaaaagaaa |
23266056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 420
Target Start/End: Original strand, 23633835 - 23633872
Alignment:
| Q |
383 |
aagctatgcgtaggggacattagtgccatattcctcaa |
420 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
23633835 |
aagctatgtgtaggggacattagagccatattcctcaa |
23633872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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