View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_106 (Length: 356)
Name: NF9264A_low_106
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_106 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 11 - 356
Target Start/End: Original strand, 44546491 - 44546836
Alignment:
| Q |
11 |
atgaagaagaaaatgaacgacataggtttttaatgaagcatatgaagcgtcatggaaaatctaatgtacttgagatagttgaggatgatgtgtatgtaaa |
110 |
Q |
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| T |
44546491 |
atgaagaagaaaatgaacgacataggtttttattgaagcatatgaagcgtcatggaaaatctaatgtacttgagatagttgaggatgatgtgtatgtaaa |
44546590 |
T |
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| Q |
111 |
atatnnnnnnnatgaatcatcatgtgcaacaaagaaaaagggtaaacttggtggaaagagacgtaatgttcaaacaaatcgtgtggtttcaaagaagggt |
210 |
Q |
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| T |
44546591 |
atatgggggggatgaatcatcatgtgcaacaaagaaaaaggataaacttggtggaaagagacgtaatgttcaaacaaatcgtgtggtttcaaagaagggt |
44546690 |
T |
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| Q |
211 |
ggtaggggtaggaaattgaaaggtgcaacaaaactctctggctctgctgctaggaaacgtgggattaacaataagaaaagtgatgtggcttcaaaaggaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44546691 |
ggtaggggtaggaaattgaaaggtgcaacaaaactctctggctctgctgctaggaaacgtgggattaacaataagaaaagtgatgtggcttcaaaaggaa |
44546790 |
T |
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| Q |
311 |
ataaaaatgctggtaaaaggaaaagaggacgtccgataaagattcc |
356 |
Q |
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| T |
44546791 |
ataaaaatgctggtaaaaggaaaagaggacgtccgataaagattcc |
44546836 |
T |
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