View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_108 (Length: 356)

Name: NF9264A_low_108
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_108
NF9264A_low_108
[»] chr3 (1 HSPs)
chr3 (246-314)||(52610618-52610686)
[»] chr2 (1 HSPs)
chr2 (260-314)||(23881375-23881429)
[»] chr8 (1 HSPs)
chr8 (57-129)||(36646299-36646371)
[»] chr1 (1 HSPs)
chr1 (246-309)||(31330946-31331009)


Alignment Details
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 246 - 314
Target Start/End: Original strand, 52610618 - 52610686
Alignment:
Q  246 atgttgttattggcattagccacacatgttgaaatctcatatgttataaaagtttgtactctatgctgt 314  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  52610618 atgttgttattggcattagccacacatgttgaaatctcatctgttataaaagtttgcactctatgctgt 52610686  T

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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 260 - 314
Target Start/End: Complemental strand, 23881429 - 23881375
Alignment:
Q  260 attagccacacatgttgaaatctcatatgttataaaagtttgtactctatgctgt 314  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23881429 attagccacacatgttgaaatctcatctgttataaaagtttgtactctatgctgt 23881375  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 36646299 - 36646371
Alignment:
Q  57 tttgctaaataagctgcctaaagctgccgttgttttaactgataatcaaaactgatcatgtccttgctaactt 129  Q
    |||||||||||||||||||||  |||  ||||||||||| || ||||| |||||||| || ||||||||||||    
T  36646299 tttgctaaataagctgcctaacactggtgttgttttaacagagaatcagaactgatcctgaccttgctaactt 36646371  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 31330946 - 31331009
Alignment:
Q  246 atgttgttattggcattagccacacatgttgaaatctcatatgttataaaagtttgtactctat 309  Q
    ||||||||||||||||||||||||  |||||||||  ||| |||||||||| |||||| |||||    
T  31330946 atgttgttattggcattagccacatgtgttgaaattccatctgttataaaaatttgtaatctat 31331009  T

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