View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_11 (Length: 473)
Name: NF9264A_low_11
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 91 - 451
Target Start/End: Complemental strand, 2284773 - 2284414
Alignment:
| Q |
91 |
gaacacttacaaatgtataacagataagaaagcatttcattcatagtaaaatactacataatatttgatacattatacaagatataggagctagtgtgag |
190 |
Q |
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| T |
2284773 |
gaacacttacaaatatataacagataagaaagcatttcattcatagtaaaatactacagaatatttgatacattatacaagatataggagctagtgtaag |
2284674 |
T |
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| Q |
191 |
aatatgatgctctattacttgtgagcgacactatttactcgcctcaaaatacactgcaatagatcccctacacaaagtcagaaatattgaacatagatct |
290 |
Q |
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| T |
2284673 |
aatatgatgctctattacttgtgagcgacactatttactcgcctcaaaatacactacaatagatcccctacacaaagtcagaaatattgaac--agatct |
2284576 |
T |
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| Q |
291 |
ctacactgtgatacaatgtcgacaaacttgttgtggttaatagatgaagaggatgatcttgtgtctgtttcaaacatgaaatcataaaa-atggatgaaa |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2284575 |
ctacactgtgatacaatgtcgacaaacttgttgtggttaatagatgaagaggaggatcttgtgtctgtttcaaacatgaaatcataaaagatggatgaaa |
2284476 |
T |
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| Q |
390 |
ttgtgtcaaatggagcacccaactttctcaaatagagcaccaactttatcctcattctccct |
451 |
Q |
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| T |
2284475 |
ttgtgtcaaatggagcacccaactttctcaaatacagcaccaactttatcctcattctccct |
2284414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 2284851 - 2284812
Alignment:
| Q |
11 |
ttatactaagtgcattcactaaaaaactgtttttatgaag |
50 |
Q |
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| T |
2284851 |
ttatactaagtgcattcactgaaaaactgtttttatgaag |
2284812 |
T |
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