View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_110 (Length: 354)
Name: NF9264A_low_110
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_110 |
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| [»] scaffold0128 (3 HSPs) |
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Alignment Details
Target: scaffold0128 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 19078 - 18871
Alignment:
| Q |
12 |
acatcaagagagccattaatgccttaactagaacagatacgatggcaactataactataacaataattcggtatcagatttgcttcaaaccagattacaa |
111 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
19078 |
acatcaagagagccattaatgtcttaactagaacagatacgatggcaactataactataacaataattcagtgtcagatttgcttcaaaccagattacaa |
18979 |
T |
|
| Q |
112 |
tgcaatcatttgttatggtgcttaatctctgtcaggaccgtttttgctactcagttcaattccctccttctttgtatcatcaattcttggctttgcaggt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
18978 |
tgcaatcatttgttatggtgcttaatctctgtcaggaccgtttttgatactcagttcaattccctccttctttg-atcatcaattcttggctttgcaggt |
18880 |
T |
|
| Q |
212 |
ttggttacc |
220 |
Q |
| |
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||||||||| |
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|
| T |
18879 |
ttggttacc |
18871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 221 - 346
Target Start/End: Complemental strand, 18679 - 18554
Alignment:
| Q |
221 |
attatttcattatccacataattaataacttaacattaaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaa |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
18679 |
attatttcattatccacataattaataacttaacattaaatatttattttatagaattattcaaagcaagttaaaaagaaatacatgtatataccactaa |
18580 |
T |
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| Q |
321 |
ctaataagaaaaaatattaatttcag |
346 |
Q |
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|||||||| ||||||||||||||||| |
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| T |
18579 |
ctaataagtaaaaatattaatttcag |
18554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 5663 - 5618
Alignment:
| Q |
12 |
acatcaagagagccattaatgccttaactagaacagatacgatggc |
57 |
Q |
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|||||||||| | |||||||| |||||||||||||||||| ||||| |
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| T |
5663 |
acatcaagagggacattaatgtcttaactagaacagatactatggc |
5618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 343
Target Start/End: Original strand, 13580396 - 13580485
Alignment:
| Q |
256 |
ttaaatatatatttt--atagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagaaaaaatattaattt |
343 |
Q |
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||||| ||||||||| ||||||||| ||| ||| | ||||||||||||| || |||||| ||||||||| |||| ||||||| |||||| |
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| T |
13580396 |
ttaaaaatatattttcaatagaattaatcaaagcgaattaaaaagaaatatatttatataatactaactattaagtaaaaataataattt |
13580485 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 343
Target Start/End: Complemental strand, 28376711 - 28376659
Alignment:
| Q |
291 |
ttaaaaagaaatacatgtatatactactaactaataagaaaaaatattaattt |
343 |
Q |
| |
|
||||||||||||| || |||||| ||||||||| |||| ||||||| |||||| |
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|
| T |
28376711 |
ttaaaaagaaatatatctatatagtactaactactaagtaaaaataataattt |
28376659 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 343
Target Start/End: Original strand, 8246762 - 8246847
Alignment:
| Q |
258 |
aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagaaaaaatattaattt |
343 |
Q |
| |
|
|||||||| || ||||||||| ||| | ||| ||||||||||||| || |||||| ||||||||| |||| ||||||| |||||| |
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| T |
8246762 |
aaatatattttcaatagaattaatcaaatcaaattaaaaagaaatatatctatatagtactaactattaagtaaaaataataattt |
8246847 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 343
Target Start/End: Complemental strand, 1240514 - 1240429
Alignment:
| Q |
258 |
aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagaaaaaatattaattt |
343 |
Q |
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|||||||| || ||||||||| ||| ||| ||||||||||||| || |||||| ||||||||| |||| ||||||| |||||| |
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| T |
1240514 |
aaatatattttcaatagaattaatcaaagcggattaaaaagaaatatatttatatagtactaactactaagtaaaaataataattt |
1240429 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 12167106 - 12167052
Alignment:
| Q |
289 |
agttaaaaagaaatacatgtatatactactaactaataagaaaaaatattaattt |
343 |
Q |
| |
|
||||||||| |||||||| ||||||||||||| || |||| ||||||| |||||| |
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| T |
12167106 |
agttaaaaataaatacatatatatactactaattactaagcaaaaataataattt |
12167052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 47059745 - 47059692
Alignment:
| Q |
290 |
gttaaaaagaaatacatgtatatactactaactaataagaaaaaatattaattt |
343 |
Q |
| |
|
|||||||||||||| || | |||| |||||||||||||| ||||||| |||||| |
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| T |
47059745 |
gttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattt |
47059692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 47082057 - 47082110
Alignment:
| Q |
290 |
gttaaaaagaaatacatgtatatactactaactaataagaaaaaatattaattt |
343 |
Q |
| |
|
|||||||||||||| || | |||| |||||||||||||| ||||||| |||||| |
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|
| T |
47082057 |
gttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattt |
47082110 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 343
Target Start/End: Complemental strand, 12174407 - 12174322
Alignment:
| Q |
258 |
aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagaaaaaatattaattt |
343 |
Q |
| |
|
|||||||| ||| ||| ||||| ||| | | | ||||||||||||| || |||||| ||||||||| |||| ||||||| |||||| |
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|
| T |
12174407 |
aaatatatttttaatataattaatcaaaacgaattaaaaagaaatatatctatatagtactaactactaagtaaaaataataattt |
12174322 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 343
Target Start/End: Original strand, 16570538 - 16570623
Alignment:
| Q |
258 |
aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagaaaaaatattaattt |
343 |
Q |
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|||||||| ||| ||||||||| ||| || | ||||||||||||| || ||||| ||| |||||||||| ||||||| |||||| |
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|
| T |
16570538 |
aaatatatttttaatagaattaatcaaagtgaattaaaaagaaatatatctatatggtaccaactaataagtaaaaataataattt |
16570623 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 343
Target Start/End: Original strand, 40876967 - 40877052
Alignment:
| Q |
258 |
aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagaaaaaatattaattt |
343 |
Q |
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|||||||| || ||||||||| || | ||||||||||||||||| || |||||| ||||||||| ||| ||||||| |||||| |
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| T |
40876967 |
aaatatattttcaatagaattaatccaaacaagttaaaaagaaatatatttatataatactaactaccaagtaaaaataataattt |
40877052 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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