View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_115 (Length: 348)
Name: NF9264A_low_115
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_115 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 7 - 338
Target Start/End: Complemental strand, 51224944 - 51224613
Alignment:
| Q |
7 |
taaaagacttcaactttcaaggctcattgctatgatgaaatcctcnnnnnnnccagtccatgagaaagttttaagacctttagtatcaatgatcaaagcc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51224944 |
taaaagacttcaactttcaaggctcattgctatgatgaaatcctcaaaaaaaccagtccatgagaaagttttaagacctttagtatcaatgatcaaagcc |
51224845 |
T |
|
| Q |
107 |
aatcttttcaggccacttcctccacctacagatccttcagctatatcagaatttcttgatgaagaagatcctatttccatattttcacctttatggtcac |
206 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51224844 |
aatcttttcaggccacttcctccacctacaaatccttcagctatatcagaatttcttgatgaagaagatcctatttccatattttcacctttatggtcac |
51224745 |
T |
|
| Q |
207 |
atctacaaatagtttatgaaatccttcttatgcttgttaatagcacagacaccaaaatacttagaaattatatggatcattctttcctccttaatctgtt |
306 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51224744 |
atctacaaatagtttatgaaatccttcttaggcttgttaatagcacagacaccaaaatacttagaaattatatggatcattctttcctccttaatctgtt |
51224645 |
T |
|
| Q |
307 |
atcacttttccaatccgaagatccaagggaac |
338 |
Q |
| |
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| | |||||||||||||||||||| ||||||| |
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| T |
51224644 |
aacgcttttccaatccgaagatccgagggaac |
51224613 |
T |
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