View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_119 (Length: 343)
Name: NF9264A_low_119
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_119 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 184 - 343
Target Start/End: Complemental strand, 19160887 - 19160728
Alignment:
| Q |
184 |
tacaatggcaatacaggaacataattggacttacaatgctcatagaagtaaacctggggattccaaaacgacggaatatacatttaaacaaaaaagttcc |
283 |
Q |
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| T |
19160887 |
tacaatggcaatacaggaacataattggacttacaatgctcatagaagtaaacctggggattccaaaacgacggaatatacatttaaacaaaaaagttcc |
19160788 |
T |
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| Q |
284 |
aaagaagattatacacatttgcacctgcaacaccggcaaagaatttacagaaatcacgcc |
343 |
Q |
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| T |
19160787 |
aaagaagattatacacatttgcacctgcaacaccggcaaagaatttacaaaaatcacgcc |
19160728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 19161051 - 19160949
Alignment:
| Q |
17 |
acaacagacatatatcggacaccaataatcatatcttcaatattaattgtcggtgctgcatattagtcattacgaatagtaacaacttgttatctcttcg |
116 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19161051 |
acaacagacatatatcggacaccaat---catatcttcaatattaattgtcggtgctgcatattagtcattacgaatagtaacaacttgttatctcttcc |
19160955 |
T |
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| Q |
117 |
aagaag |
122 |
Q |
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|||||| |
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| T |
19160954 |
aagaag |
19160949 |
T |
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