View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_12 (Length: 470)
Name: NF9264A_low_12
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 6 - 455
Target Start/End: Complemental strand, 22371696 - 22371245
Alignment:
| Q |
6 |
aaatacaggaaatatgaaatcacggtattgttttctaacagagtttggnnnnnnnnn--ttagaaaacaacaactaatcaaatgtcgtattgttcagctt |
103 |
Q |
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| T |
22371696 |
aaatacaggaaatatgaaatcacggtattgttttctaacagagtttggaaaaaaaaaaattagaaaacaacaactaatcaaatgtcgtattgttcagctt |
22371597 |
T |
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| Q |
104 |
ccaaacaataacagcccctttgcaaaggaaaatatgtttgatacttcattaattaggacaacaattagaaaaggtaggattagaattaaacaactactcg |
203 |
Q |
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| T |
22371596 |
ccaaacaataacagcccctttgcaaaggaaaatatgtttgatacttcattaattaggacaacaattagaaaaggtaggattagaattaaacaactactcg |
22371497 |
T |
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| Q |
204 |
ttcgacaacaaaggggaaaatacatgatgaaaatgctcaacaaccaagtagcacgataacataatttagaaatatatttcggcctcatcttgttgacaac |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22371496 |
ttcgacaacaaaggggaaaatacatgatgaaaatgctcaacaaccaagtagcacgataacagaatttagaaatatatttcggcctcatcttgttgacaac |
22371397 |
T |
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| Q |
304 |
cttctccagctcatcaaatggattggatggtatccaatagacctattagattgagcaaaaaataacaacgatcagacatatattcaaagctcgtatgaag |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22371396 |
cttctccagctcatcaaatggattggatggtatccaatagacctataagattgagcaaagaataacaacgatcagacatatattcaaagctcgtatgaag |
22371297 |
T |
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| Q |
404 |
catgtaatgaaagatcnnnnnnnttgttcctttgcataaccacttgcatcat |
455 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22371296 |
catgtaatgaaagatcaaaaaaattgttcctttgcataaccacttgcatcat |
22371245 |
T |
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