View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_126 (Length: 334)
Name: NF9264A_low_126
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_126 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 329
Target Start/End: Complemental strand, 4160256 - 4159944
Alignment:
| Q |
17 |
gaacatgtccccaccaacatatgtcaaattgttatttccacataaattctctacaacctttggacgatcaaaaacaacacatttcaaattagaaaatgtc |
116 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||| |
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| T |
4160256 |
gaacatgtccccaccaacatatgtcaaattgttacttccacataaattctctacaacctttggacgatcaaaaacaacacaagtcaacttaggaaatgtc |
4160157 |
T |
|
| Q |
117 |
tcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattacaatctttcattgccaaattaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4160156 |
tcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattgcaatctttcattgccaaattaa |
4160057 |
T |
|
| Q |
217 |
tcatttttgaatcactagccaaagcatcattgtataatgtattatactcagggtttttgttaagaaactcccataaatcacaacctaaattgacagtaaa |
316 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4160056 |
tcattttggaatcactagccaaagcatcattgtataatgtattatactcagggtttttgttaagaaactcccataaatcacaacctaaattgacagcaaa |
4159957 |
T |
|
| Q |
317 |
tagagtgagatct |
329 |
Q |
| |
|
||||||||||||| |
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| T |
4159956 |
tagagtgagatct |
4159944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 4171746 - 4172034
Alignment:
| Q |
17 |
gaacatgtccccaccaacatatgtcaaattgttatttccacataaattctctacaacctttggacgatcaaaaacaacacatttcaaattagaaaatgtc |
116 |
Q |
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|
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| | ||||| |
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| T |
4171746 |
gaacatgtccccaccgacatatgtcaaattgttacttccacataaattctctacaacctttggacgatcaaaaacaacacatctcaacttaggatatgtc |
4171845 |
T |
|
| Q |
117 |
tcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattacaatctttcattgccaaattaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| ||||||||||| |
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| T |
4171846 |
tcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgaatccaacccctcaaacacaaaattgcaatctttcaatgccaaattaa |
4171945 |
T |
|
| Q |
217 |
tcatttttgaatcactagccaaagcatcattgtataatgtattatactcagggtttttgttaagaaactcccataaatcacaacctaaa |
305 |
Q |
| |
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||||||| ||||||||||||| |||||||||| | ||| ||||||| ||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
4171946 |
tcattttggaatcactagccatagcatcattgaacaatctattatattcaggatttttgttaagaaactcccataaatcacatcctaaa |
4172034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 4177369 - 4177641
Alignment:
| Q |
17 |
gaacatgtccccaccaacatatgtcaaattgttatttccacataaattctctacaacctttggacgatcaaaaacaacacatttcaaattagaaaatgtc |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||| || ||||| |||| ||||||||||| | ||| | |||||| |||| ||||||||| |||| ||| ||| |
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| T |
4177369 |
gaacatgtccccaccaacataagtcaaattattgcttccagataagttctctacaacttgtggcctatcaaacacaatacatttcaacttaggaaaagtc |
4177468 |
T |
|
| Q |
117 |
tcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattacaatctttcattgccaaattaa |
216 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| |||| ||||||| ||| |||||| || | |
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| T |
4177469 |
tcacaaataattttaccagtggttccatttccaccaccaacatccacaattgattccaatccatcaaacacaaaatcacaatctctcaatgccaagttta |
4177568 |
T |
|
| Q |
217 |
tcatttttgaatcactagccaaagcatcattgtataatgtattatactcagggtttttgttaagaaactccca |
289 |
Q |
| |
|
||| ||| ||||||||||||| |||||||| || || ||||||| ||||| ||||| | |||||| ||||| |
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|
| T |
4177569 |
tcaatttagaatcactagccattgcatcattaaatgatctattatattcaggatttttatcaagaaaatccca |
4177641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 237
Target Start/End: Complemental strand, 34343695 - 34343525
Alignment:
| Q |
67 |
ctacaacctttggacgatcaaaaacaacacatttcaaattagaaaatgtctcacaaataatcttaccagttgttccatttccaccaccaacatccacaat |
166 |
Q |
| |
|
||||||||| |||| ||||| |||||||||||||||| |||| ||| | |||||| ||||| || | || |||||| |||||||||||||||||||||| |
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| T |
34343695 |
ctacaacctgtggaagatcataaacaacacatttcaacttaggaaaagcctcacatataattctagctgtggttccagttccaccaccaacatccacaat |
34343596 |
T |
|
| Q |
167 |
tgattccaacccctcaaacaccaaattacaatctttcattgccaaattaatcatttttgaatcactagcca |
237 |
Q |
| |
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|| || | ||| ||||||||| | |||||| ||||| |||||||| | ||||| ||||||||||||| |
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| T |
34343595 |
agaatcaatcccttcaaacaccttactacaatttttcaaagccaaattcaccatttgagaatcactagcca |
34343525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 184
Target Start/End: Complemental strand, 34331071 - 34330971
Alignment:
| Q |
84 |
tcaaaaacaacacatttcaaattagaaaatgtctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaa |
183 |
Q |
| |
|
|||||||||| |||||| | |||| ||| | |||||| ||||| ||| | || ||||||||||||||||||||||||||||| ||||| | |||||||| |
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| T |
34331071 |
tcaaaaacaagacatttgaccttaggaaaagcctcacatataattttagccgtcgttccatttccaccaccaacatccacaatagattctatcccctcaa |
34330972 |
T |
|
| Q |
184 |
a |
184 |
Q |
| |
|
| |
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|
| T |
34330971 |
a |
34330971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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