View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_128 (Length: 332)
Name: NF9264A_low_128
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_128 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 10 - 332
Target Start/End: Original strand, 49425526 - 49425847
Alignment:
| Q |
10 |
agatgaaaacataagttagcatagaactacaaagaacatggatctggcttattgaagtcatttgagagtccaagtcataaacaagcaaaaagaggttgat |
109 |
Q |
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| T |
49425526 |
agatgaaaacataagttagcatagaactacaaaaaacatcgatctggcttattgaagtcatttgagagtccaagtcataaacaagcaaaaagaggttgat |
49425625 |
T |
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| Q |
110 |
gagttttaagtataatattttcttaacatgtgtacaagctaaggttcacagttcaatccaccaaacccagcagttgcatgttagaaaatcaattgatcaa |
209 |
Q |
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| T |
49425626 |
gagttttaagtataatattttcttaacatgtgtacaagctaaggttcacagttcaatccaccaaacccagcagttgcatgttagaaaatcaattgatgaa |
49425725 |
T |
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| Q |
210 |
caactactcgaattcaaagggcnnnnnnntcaattgatgaaaaatgttttgagagatcaactactcgtttaatggaagtaagttgagtttttatgagctt |
309 |
Q |
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| T |
49425726 |
caactactcgaattcaaagggcaaaaaaatcaattgatgaaaaatg-tttgagatatcaactactcgtttaatggaagtaagttaagtttttatgagctt |
49425824 |
T |
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| Q |
310 |
ggtgtttgtggcttttatgtttt |
332 |
Q |
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| T |
49425825 |
ggtgtttgtggcttttatgtttt |
49425847 |
T |
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