View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9264A_low_129 (Length: 332)
Name: NF9264A_low_129
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_129 |
 | |
|
| [»] scaffold0491 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 15)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 24 - 315
Target Start/End: Complemental strand, 2338668 - 2338377
Alignment:
| Q |
24 |
ttaacggtgtaagctctgtgacgaaactcttcaacacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaac |
123 |
Q |
| |
|
|||| |||| || ||||| ||| ||||||| |||||| |||||| |||||||| || ||||||||||||||||||| ||||||| ||||| ||||| |
|
|
| T |
2338668 |
ttaatggtgcaatctctgggacaaaactctgtgacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaac |
2338569 |
T |
|
| Q |
124 |
acgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagt |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2338568 |
acgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagc |
2338469 |
T |
|
| Q |
224 |
gatgacagtatatcaccagggtgtcttcctattaaagtttcaagtgccactactccaaagctatatacatcacacttttcactcacaaccat |
315 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
2338468 |
tatgatagtatatcaccagggtgtcttcccattaaagtttcaagtgccactactccaaaactatatacatcgcacttttcactcacaaccat |
2338377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 29 - 315
Target Start/End: Complemental strand, 2330807 - 2330521
Alignment:
| Q |
29 |
ggtgtaagctctgtgacgaaactcttcaacacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaa |
128 |
Q |
| |
|
|||| ||||||| |||| ||||||| |||||| |||||| |||||||| || ||||||||||||||||||| ||||||| ||||| |||||||||| |
|
|
| T |
2330807 |
ggtgcaagctctatgacaaaactctgtgacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaa |
2330708 |
T |
|
| Q |
129 |
ttatgtcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatga |
228 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2330707 |
ttatgtccagtaaaacctttacattatttggaagtgggagacgttggtctaatacttcacataatttcatcccttgagtcgatgctaactgaagtgatga |
2330608 |
T |
|
| Q |
229 |
cagtatatcaccagggtgtcttcctattaaagtttcaagtgccactactccaaagctatatacatcacacttttcactcacaaccat |
315 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
2330607 |
cagtatatcaccagggtgtcttcccattaaagtttcaagtgccacaactccaaaactatatacatcgcacttttcactcacaaccat |
2330521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 60 - 321
Target Start/End: Complemental strand, 2322162 - 2321901
Alignment:
| Q |
60 |
cacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatttgg |
159 |
Q |
| |
|
|||| |||||| |||||||||| ||| |||||||||||||| |||||||| | | ||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
2322162 |
cacatttcattgttggtcgagagaaaggattgagatttaagcaagcaaatgctattgtggcaacacgaattatgtcaagtaaaaccatcacattattcgg |
2322063 |
T |
|
| Q |
160 |
aagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctattaaa |
259 |
Q |
| |
|
|||| | ||||| |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2322062 |
aagtagaagacgttggtctaatacttcacataacttaatgccttgagttgatgctaactgaagtgatgacagtatatcaccagggtgtcttcccattaaa |
2321963 |
T |
|
| Q |
260 |
gtttcaagtgccactactccaaagctatatacatcacacttttcactcacaaccatagtata |
321 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2321962 |
gtttcaagtgccacaactccaaagctatatacatcgcacttttcactcacaaccatagtata |
2321901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 93 - 321
Target Start/End: Original strand, 3954500 - 3954728
Alignment:
| Q |
93 |
gatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataa |
192 |
Q |
| |
|
|||||||||||||| |||| |||||| ||||| ||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3954500 |
gatttaagcatgcagatgctactacaacaacatgaattatgtcaagtaaaactttcacatcatttggaagtgggagacgttggtctaatacttcacataa |
3954599 |
T |
|
| Q |
193 |
tttcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctattaaagtttcaagtgccactactccaaagctatataca |
292 |
Q |
| |
|
||| ||| ||||||| |||| ||| ||||||||||||| ||| || | || | |||||| | |||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
3954600 |
tttgatgtcttgagttgatgttaattgaagtgatgacaatatttcctcgggatatcttcccactaaaatttcaagtgccactactccaaaactatataca |
3954699 |
T |
|
| Q |
293 |
tcacacttttcactcacaaccatagtata |
321 |
Q |
| |
|
||||| |||||||| |||||||||||||| |
|
|
| T |
3954700 |
tcacatttttcacttacaaccatagtata |
3954728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 73 - 322
Target Start/End: Complemental strand, 1089490 - 1089241
Alignment:
| Q |
73 |
tggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgc |
172 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||| || || |||||| ||||||||||| | | | | | | ||| |||||||||| ||||| |
|
|
| T |
1089490 |
tggtcgagaacgaggattgagatttaagcatgcaaatgctaccacggcaacatgaattatgtcatggatagctatttctttacttggaagtggaagacgt |
1089391 |
T |
|
| Q |
173 |
tggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctattaaagtttcaagtgcca |
272 |
Q |
| |
|
||||||||||||| ||||||||| || | ||| ||||||| | | ||||| ||||||| |||||| ||||||| ||||| | ||||||||||||||||| |
|
|
| T |
1089390 |
tggtctaatacttgacataatttgatactttgtgtcgatgttgattgaagggatgacaatatatcttcagggtgccttccaactaaagtttcaagtgcca |
1089291 |
T |
|
| Q |
273 |
ctactccaaagctatatacatcacacttttcactcacaaccatagtataa |
322 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1089290 |
ctacaccaaaactatatacatcacacttttcactcacagccatagtataa |
1089241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 24 - 321
Target Start/End: Original strand, 1556679 - 1556976
Alignment:
| Q |
24 |
ttaacggtgtaagctctgtgacgaaactcttcaacacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaac |
123 |
Q |
| |
|
|||| |||||||| || ||||| ||||| | |||||| |||||| ||||||||| |||| |||| |||||||||||||||||| || || |||| |
|
|
| T |
1556679 |
ttaatggtgtaagttcagtgacaaaactttgtgacacacgtttcattgttggtcgagaatgaggattgatatttaagcatgcaaatgcaaccacgacaac |
1556778 |
T |
|
| Q |
124 |
acgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagt |
223 |
Q |
| |
|
| ||||||||||| ||| ||| | |||||||||||||||| ||||||||||||||||||| ||||| ||| | | | | ||||||| | |||||||| |
|
|
| T |
1556779 |
atgaattatgtcacgtataactatgtcattatttggaagtggaagacgctggtctaatacttgacatagtttgacacttcgtgtcgatgttgactgaagt |
1556878 |
T |
|
| Q |
224 |
gatgacagtatatcaccagggtgtcttcctattaaagtttcaagtgccactactccaaagctatatacatcacacttttcactcacaaccatagtata |
321 |
Q |
| |
|
|||||||||| ||| ||||| || ||||| | ||||||||||||||| || || ||||| |||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
1556879 |
gatgacagtaaatctccaggatgccttccaactaaagtttcaagtgctacaacaccaaaactatatgcatcacacttttcattcacaaccatagtata |
1556976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 24 - 321
Target Start/End: Complemental strand, 1597292 - 1596995
Alignment:
| Q |
24 |
ttaacggtgtaagctctgtgacgaaactcttcaacacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaac |
123 |
Q |
| |
|
|||| ||||||||||| ||||| ||||| | |||||| |||||| ||||||||| ||||| | | | |||||||||||||||| |||| ||||| |
|
|
| T |
1597292 |
ttaatggtgtaagctcggtgacaaaactttgtgacacacgtttcattgttggtcgagaacgaggatcaatagttaagcatgcaaatgcaactatggcaac |
1597193 |
T |
|
| Q |
124 |
acgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagt |
223 |
Q |
| |
|
| ||||||||| | ||| ||| || |||||||||||||||| ||||| ||||||||||||| ||||| ||| | | ||| ||||||| | | |||||| |
|
|
| T |
1597192 |
atgaattatgtgacgtataactatctcattatttggaagtggaagacgttggtctaatacttgacatagtttgagactttgtgtcgatgatgattgaagt |
1597093 |
T |
|
| Q |
224 |
gatgacagtatatcaccagggtgtcttcctattaaagtttcaagtgccactactccaaagctatatacatcacacttttcactcacaaccatagtata |
321 |
Q |
| |
|
||||||| || ||| |||||||| ||||| | |||||||||||||||||| || ||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
1597092 |
gatgacaataaatccccagggtgccttccaactaaagtttcaagtgccaccacgccaaagctatatacatcacacttttcattcaccgccatagtata |
1596995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 57 - 321
Target Start/End: Original strand, 1549892 - 1550156
Alignment:
| Q |
57 |
acacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatt |
156 |
Q |
| |
|
||||||| |||||| ||||||||||||||| ||||||||||| ||||||||||| || || ||||| ||||||||||| ||| ||| | ||||||| |
|
|
| T |
1549892 |
acacacatttcattgttggtcgagagcgaggattgagatttaaacatgcaaatgctaccacggcaacttgaattatgtcacgtataactatttcattatt |
1549991 |
T |
|
| Q |
157 |
tggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctatt |
256 |
Q |
| |
|
||||||||| | ||| ||||||||||||| ||||||||| || | ||| ||||||| | |||||||||| || |||||| ||||||| |||| | | |
|
|
| T |
1549992 |
tggaagtggaatacgttggtctaatacttgacataatttgatactttgtgtcgatggagattgaagtgatgccaatatatcctcagggtgctttccaact |
1550091 |
T |
|
| Q |
257 |
aaagtttcaagtgccactactccaaagctatatacatcacacttttcactcacaaccatagtata |
321 |
Q |
| |
|
|| ||||||||||||||||| ||||| ||||||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
1550092 |
aatgtttcaagtgccactacaccaaaactatatacatcacacttctcattcacagccatagtata |
1550156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 24 - 322
Target Start/End: Complemental strand, 1605266 - 1604968
Alignment:
| Q |
24 |
ttaacggtgtaagctctgtgacgaaactcttcaacacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaac |
123 |
Q |
| |
|
|||| ||||| ||||| ||||| ||||| | |||||| |||||| ||||||||| ||||| |||| |||||||||||||||||| || || ||||| |
|
|
| T |
1605266 |
ttaatggtgtgagctccgtgacaaaactttgtgacacacgtttcattgttggtcgagaacgaggattgatatttaagcatgcaaatgcaaccacggcaac |
1605167 |
T |
|
| Q |
124 |
acgaattatgtcaagtaaaaccttca-cattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaag |
222 |
Q |
| |
|
| ||||||||||| ||| ||| | || | |||||||||||||| ||||||||||||||||||| ||||| ||| | | ||| ||||| | | ||||| |
|
|
| T |
1605166 |
atgaattatgtcacgtataac-tacatcgttatttggaagtggaagacgctggtctaatacttgacatagtttgacactttgtgtcgaatttgattgaag |
1605068 |
T |
|
| Q |
223 |
tgatgacagtatatcaccagggtgtcttcctattaaagtttcaagtgccactactccaaagctatatacatcacacttttcactcacaaccatagtataa |
322 |
Q |
| |
|
|||||||| |||||| ||||||| ||||| | ||||| ||||||||||||||| ||||| ||||||||||||||||||||| ||||| |||| |||||| |
|
|
| T |
1605067 |
tgatgacaatatatcctcagggtgccttccaactaaagcttcaagtgccactacaccaaaactatatacatcacacttttcattcacagccattgtataa |
1604968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 95 - 321
Target Start/End: Complemental strand, 3853449 - 3853223
Alignment:
| Q |
95 |
tttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatt |
194 |
Q |
| |
|
||||| ||||||||||| || |||||||| |||| |||| |||| ||||| || ||||||||||| || ||||||| | ||||| |||||||| || || |
|
|
| T |
3853449 |
tttaaacatgcaaatgctacgacagcaacctgaataatgtgaagtgaaaccatctcattatttggacgttggagacgtttgtctagtacttcacgtagtt |
3853350 |
T |
|
| Q |
195 |
tcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctattaaagtttcaagtgccactactccaaagctatatacatc |
294 |
Q |
| |
|
| ||| ||||||| |||| ||| ||||||||||||| ||| || |||| |||||||| | |||| |||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
3853349 |
tgatgtcttgagttgatgttaattgaagtgatgacaatatttcctcaggatgtcttcccaataaaatttcaagtgccattaccccaaaactatatacatc |
3853250 |
T |
|
| Q |
295 |
acacttttcactcacaaccatagtata |
321 |
Q |
| |
|
|||||||||||| |||||||||||||| |
|
|
| T |
3853249 |
acacttttcacttacaaccatagtata |
3853223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 26 - 321
Target Start/End: Original strand, 1540636 - 1540931
Alignment:
| Q |
26 |
aacggtgtaagctctgtgacgaaactcttcaacacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacac |
125 |
Q |
| |
|
|||||||||||||| ||||| ||||| | |||||| |||||| ||||||||| ||||| ||| |||||||||||||||||| || | | |||| |
|
|
| T |
1540636 |
aacggtgtaagctcggtgacaaaactttgtgacacacgtttcattgttggtcgagaacgaggattgccatttaagcatgcaaatgctaccagggaaacat |
1540735 |
T |
|
| Q |
126 |
gaattatgtcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtga |
225 |
Q |
| |
|
||||||||||| ||| ||| | |||||||||||||||| ||||| ||||||||||||| || || ||| | | | ||||||| | | |||||||| |
|
|
| T |
1540736 |
gaattatgtcacgtataactatgtcattatttggaagtggaagacgttggtctaatacttgacgtagtttgacacttcttgtcgatgttgattgaagtga |
1540835 |
T |
|
| Q |
226 |
tgacagtatatcaccagggtgtcttcctattaaagtttcaagtgccactactccaaagctatatacatcacacttttcactcacaaccatagtata |
321 |
Q |
| |
|
||||| || ||| |||||||| ||||| | |||||||||||||| |||||| ||||| ||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
1540836 |
tgacaataaatccccagggtgccttccaactaaagtttcaagtgtcactacaccaaaactatatacatcacacttttcattcacagccatagtata |
1540931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 73 - 322
Target Start/End: Complemental strand, 1106830 - 1106581
Alignment:
| Q |
73 |
tggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgc |
172 |
Q |
| |
|
||||||||| ||||| |||| |||||||||||||||||| || || |||||| ||||||||||| ||| ||| | |||||||||||||| |||||| |
|
|
| T |
1106830 |
tggtcgagaacgaggattgatatttaagcatgcaaatgcaaccacggcaacatgaattatgtcacgtataactacgtcgttatttggaagtggaagacgc |
1106731 |
T |
|
| Q |
173 |
tggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctattaaagtttcaagtgcca |
272 |
Q |
| |
|
||||||||||||| ||||| ||| | | ||| | ||| | | ||||||||||||| |||||| ||||||| ||||| | ||||| ||||||||||| |
|
|
| T |
1106730 |
tggtctaatacttgacatagtttgacactttgtggcgaatttgattgaagtgatgacaatatatcctcagggtgccttccaactaaagcttcaagtgcca |
1106631 |
T |
|
| Q |
273 |
ctactccaaagctatatacatcacacttttcactcacaaccatagtataa |
322 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||| ||||| |||| |||||| |
|
|
| T |
1106630 |
ctacaccaaaactatatacatcacacttttcattcacagccattgtataa |
1106581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 59 - 289
Target Start/End: Original strand, 1563970 - 1564200
Alignment:
| Q |
59 |
acacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatttg |
158 |
Q |
| |
|
||||| |||||| ||||||||| ||||| ||||||||||| | ||||||||| || || |||||| ||||||||||| ||| ||| | | ||||||| |
|
|
| T |
1563970 |
acacatttcattgttggtcgagaacgaggattgagatttaaacttgcaaatgctaccacggcaacatgaattatgtcacgtataactatttcgttatttg |
1564069 |
T |
|
| Q |
159 |
gaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctattaa |
258 |
Q |
| |
|
||||| | ||||| ||||||||||||| ||||||||| || | ||| ||||||| | | ||||||||||||| |||||| ||||| | ||||| | ||| |
|
|
| T |
1564070 |
gaagtcgaagacgttggtctaatacttgacataatttgatactttgtgtcgatgttgattgaagtgatgacaatatatctccaggtttccttccaactaa |
1564169 |
T |
|
| Q |
259 |
agtttcaagtgccactactccaaagctatat |
289 |
Q |
| |
|
||||||||||| |||||| ||||| |||||| |
|
|
| T |
1564170 |
agtttcaagtgtcactacaccaaaactatat |
1564200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 73 - 237
Target Start/End: Complemental strand, 2335308 - 2335141
Alignment:
| Q |
73 |
tggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgc |
172 |
Q |
| |
|
||||| ||||| ||| ||||||||||||||||||||||| || | |||||||||||||||||||||||||| ||||||||||||||| | || || | |
|
|
| T |
2335308 |
tggtcaagagcaaggattgagatttaagcatgcaaatgctacaatgacaacacgaattatgtcaagtaaaaccatcacattatttggaaataggggatgt |
2335209 |
T |
|
| Q |
173 |
tggtctaatacttcaca---taatttcatgccttgagtcgatgctaactgaagtgatgacagtatatc |
237 |
Q |
| |
|
|| |||||||||||||| |||||||||||| |||| ||||| || ||||||||||||| |||||| |
|
|
| T |
2335208 |
tgttctaatacttcacataataatttcatgccgagagttgatgcaaattgaagtgatgacaatatatc |
2335141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 197
Target Start/End: Complemental strand, 2326455 - 2326313
Alignment:
| Q |
57 |
acacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattat--gtcaagtaaaaccttcacatta |
154 |
Q |
| |
|
||||||| |||||| |||||||||| ||| |||||||||||| |||||||||| |||| |||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
2326455 |
acacacatttcattgttggtcgagagaaaggattgagatttaagtatgcaaatgctactaaggcaacacgaattatatgtcaagtaaaaccatcatatta |
2326356 |
T |
|
| Q |
155 |
tttggaagtgggagacgctggtctaatacttcacataatttca |
197 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
2326355 |
ttcagaagtgggagacgttggtctaatacttcacataacttca |
2326313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 34 - 321
Target Start/End: Original strand, 5296 - 5583
Alignment:
| Q |
34 |
aagctctgtgacgaaactcttcaacacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatg |
133 |
Q |
| |
|
|||||| ||||| ||||| | | ||||||| |||||| ||||||||| ||||| |||| ||||||||||||||| || || || |||| | |||||||| |
|
|
| T |
5296 |
aagctcggtgacaaaactttgcgacacacatttcattgttggtcgagaacgaggattgacatttaagcatgcaaaggcaacaacggcaaaatgaattatg |
5395 |
T |
|
| Q |
134 |
tcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagta |
233 |
Q |
| |
|
| | ||| |||| | |||||||||||||||| ||||||||||||||||||| ||||| ||| | | ||| ||||||| | | ||||||||||||| || |
|
|
| T |
5396 |
ttacgtataaccatttcattatttggaagtggaagacgctggtctaatacttgacatagtttgacactttgtgtcgatgttgattgaagtgatgacaata |
5495 |
T |
|
| Q |
234 |
tatcaccagggtgtcttcctattaaagtttcaagtgccactactccaaagctatatacatcacacttttcactcacaaccatagtata |
321 |
Q |
| |
|
||| |||||||| ||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
5496 |
aatccccagggtgccttccagctaaagtttcaagtgccactacaccaaaactatatacatcacacttttcattcacagccatagtata |
5583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 34 - 321
Target Start/End: Original strand, 18738524 - 18738811
Alignment:
| Q |
34 |
aagctctgtgacgaaactcttcaacacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatg |
133 |
Q |
| |
|
|||||| ||||| ||||| | | ||||||| |||||| ||||||||| ||||| |||| |||||||||||||||||| || || ||| || |||||||| |
|
|
| T |
18738524 |
aagctcggtgacaaaactttgcgacacacatttcattgttggtcgagaacgaggattgacatttaagcatgcaaatgctaccacggcagcatgaattatg |
18738623 |
T |
|
| Q |
134 |
tcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagta |
233 |
Q |
| |
|
||| ||| ||| | |||||||||||||||| ||||| ||||||||||||| ||||| ||| | | ||| ||||||| | | ||||||||||||| || |
|
|
| T |
18738624 |
tcacgtataactatgtcattatttggaagtggaagacggtggtctaatacttgacatagtttgagactttgtgtcgatgttgattgaagtgatgacaata |
18738723 |
T |
|
| Q |
234 |
tatcaccagggtgtcttcctattaaagtttcaagtgccactactccaaagctatatacatcacacttttcactcacaaccatagtata |
321 |
Q |
| |
|
||| |||||||| ||||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||| |||||||||| |
|
|
| T |
18738724 |
aatccccagggtgccttccaactaaagtttcaagtgccactacaccaaaactatatacatcacacttttcattaacagccatagtata |
18738811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 34 - 321
Target Start/End: Original strand, 18743488 - 18743775
Alignment:
| Q |
34 |
aagctctgtgacgaaactcttcaacacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatg |
133 |
Q |
| |
|
|||||| ||||| ||||| | | ||||||| |||||| ||||||||| ||||| |||| |||||||||||||||||| || || ||| || |||||||| |
|
|
| T |
18743488 |
aagctcggtgacaaaactttgcgacacacatttcattgttggtcgagaacgaggattgacatttaagcatgcaaatgctaccacggcagcatgaattatg |
18743587 |
T |
|
| Q |
134 |
tcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagta |
233 |
Q |
| |
|
||| ||| ||| | |||||||||||||||| ||||| ||||||||||||| ||||| ||| | | ||| ||||||| | | ||||||||||||| || |
|
|
| T |
18743588 |
tcacgtataactatgtcattatttggaagtggaagacggtggtctaatacttgacatagtttgagactttgtgtcgatgttgattgaagtgatgacaata |
18743687 |
T |
|
| Q |
234 |
tatcaccagggtgtcttcctattaaagtttcaagtgccactactccaaagctatatacatcacacttttcactcacaaccatagtata |
321 |
Q |
| |
|
||| |||||||| ||||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||| |||||||||| |
|
|
| T |
18743688 |
aatccccagggtgccttccaactaaagtttcaagtgccactacaccaaaactatatacatcacacttttcattaacagccatagtata |
18743775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 34 - 321
Target Start/End: Original strand, 18748455 - 18748742
Alignment:
| Q |
34 |
aagctctgtgacgaaactcttcaacacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatg |
133 |
Q |
| |
|
|||||| ||||| ||||| | | ||||||| |||||| ||||||||| ||||| |||| ||||||||||||||| || || || |||| | |||||||| |
|
|
| T |
18748455 |
aagctcggtgacaaaactttgcgacacacatttcattgttggtcgagaacgaggattgacatttaagcatgcaaaggcaacaacggcaaaatgaattatg |
18748554 |
T |
|
| Q |
134 |
tcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagta |
233 |
Q |
| |
|
| | ||| |||| | |||||||||||||||| ||||||||||||||||||| ||||| ||| | | ||| ||||||| | | ||||||||||||| || |
|
|
| T |
18748555 |
ttacgtataaccatttcattatttggaagtggaagacgctggtctaatacttgacatagtttgacactttgtgtcgatgttgattgaagtgatgacaata |
18748654 |
T |
|
| Q |
234 |
tatcaccagggtgtcttcctattaaagtttcaagtgccactactccaaagctatatacatcacacttttcactcacaaccatagtata |
321 |
Q |
| |
|
||| |||||||| ||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
18748655 |
aatccccagggtgccttccagctaaagtttcaagtgccactacaccaaaactatatacatcacacttttcattcacagccatagtata |
18748742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 57 - 321
Target Start/End: Original strand, 18722826 - 18723090
Alignment:
| Q |
57 |
acacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatt |
156 |
Q |
| |
|
||||||| |||||| ||||||||| ||||| |||| ||||||||||||||| || || || |||| | ||||||||| | ||| |||| | ||||||| |
|
|
| T |
18722826 |
acacacatttcattgttggtcgagaacgaggattgacatttaagcatgcaaaggcaacaacggcaaaatgaattatgttacgtataaccatttcattatt |
18722925 |
T |
|
| Q |
157 |
tggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctatt |
256 |
Q |
| |
|
||||||||| ||||||||||||||||||| | ||| ||| | | ||| || |||| | | ||||||||||||| || ||| |||||||| ||||| | |
|
|
| T |
18722926 |
tggaagtggaagacgctggtctaatacttgatatagtttgacactttgtgttgatgttgattgaagtgatgacaataaatccccagggtgccttccagct |
18723025 |
T |
|
| Q |
257 |
aaagtttcaagtgccactactccaaagctatatacatcacacttttcactcacaaccatagtata |
321 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
18723026 |
aaagtttcaagtgccactacaccaaaactatatacatcacacttttcattcacagccatagtata |
18723090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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