View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_139 (Length: 325)
Name: NF9264A_low_139
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_139 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 133 - 316
Target Start/End: Original strand, 28828975 - 28829158
Alignment:
| Q |
133 |
aggaaggcccccaccatacaacgcgtttaataattaataatttggcgaagatttgacaaagatatttttctatttttcttctaatttgttacctcatgac |
232 |
Q |
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| T |
28828975 |
aggaaggcccccaccatacaacgcgtttaataattaataatttggcgaagatttgacaaagatatttttctatttttcttctaatttgttacctcatgac |
28829074 |
T |
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| Q |
233 |
agtgccagcttccacaatcattcttttcccttccaaacccactcgctataaattcctctatttcccaatataactccccaacac |
316 |
Q |
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| T |
28829075 |
agtgccagcttccacaatcattcttttcccttccaaacacacttgctataaattcctctatttcccaatataacttcacaacac |
28829158 |
T |
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Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 28828843 - 28828918
Alignment:
| Q |
1 |
ttttgtaagaaaaagtttgacaatccaactaaaccaatgtgattttctgatttttaaagatctttccaatactatt |
76 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28828843 |
ttttgtaggaaaaagtttgacaatccaactagaccaatgtgattttctgatttttaaagatctttccaatactatt |
28828918 |
T |
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