View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_145 (Length: 323)
Name: NF9264A_low_145
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_145 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 10 - 314
Target Start/End: Complemental strand, 42852450 - 42852146
Alignment:
| Q |
10 |
tgagatggacatcagggatgatgatgaactacctgcaatggaagacaatacaaacaagatacaaccttttgagccgtatgttgatgcatatttagatagt |
109 |
Q |
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| T |
42852450 |
tgagacggacataagggatgatgatgaactacctgcaatggaagacaatacaaacaagatacaaccttttgagccgtatgttgatgcatatttagatggt |
42852351 |
T |
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| Q |
110 |
tttacttcacatgctttgtttatattttctatatcaatcaaacttggatgttatatggtagcatatagtggcatccacaagttatcaaattctcatattt |
209 |
Q |
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| T |
42852350 |
tttacttcacatgctttgtttatattctctatatcaatcaaacttggatgttatatggtagcatatagtggcatccacaagttatcaaattctcatattt |
42852251 |
T |
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| Q |
210 |
ttaatcannnnnnnatgtataggcctgaaatatttaaacatgattcaaatgaaagagccaccgtgcaacaagagaatgagacagacacaagtgatgatga |
309 |
Q |
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| T |
42852250 |
ttaatcatttttttatgtataggcctgaaatatttaaacatgattcaaatgaaagagccaccgtgcaacaagagaatgagacagacacaagtgatgatga |
42852151 |
T |
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| Q |
310 |
tgatg |
314 |
Q |
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||||| |
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| T |
42852150 |
tgatg |
42852146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 105 - 312
Target Start/End: Complemental strand, 42852630 - 42852424
Alignment:
| Q |
105 |
atagttttacttcacatgctttgtttatattttctatatcaatcaaacttggatgttatatggtagcatatagtggcatccacaagttatcaaattctca |
204 |
Q |
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| T |
42852630 |
atagtttttcttcccatactttgttcatattccctat--cattcaaacttggatgttgtatggtggcatataatggtatccacaacatatcaaattctca |
42852533 |
T |
|
| Q |
205 |
tattttt--aatcannnnnnnatgtataggcctgaaatatttaaacatgattcaaatgaaagagccaccgtgcaacaagagaatgagacagacacaagtg |
302 |
Q |
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| T |
42852532 |
tatttttttaatcatgtttt-atgtataggcctgaaatatttaaacaggatttaaaagtaatagccaccgagcaacaagagactgagacggacataaggg |
42852434 |
T |
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| Q |
303 |
atgatgatga |
312 |
Q |
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| T |
42852433 |
atgatgatga |
42852424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 42852155 - 42852092
Alignment:
| Q |
26 |
gatgatgatgaactacctgcaatggaagacaatacaaacaagatacaaccttttgagccgtatg |
89 |
Q |
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| T |
42852155 |
gatgatgatggactacctccactggaagccaatacaaacaggatacaaccttttgagctgtatg |
42852092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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