View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9264A_low_15 (Length: 460)
Name: NF9264A_low_15
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 7 - 454
Target Start/End: Complemental strand, 1216568 - 1216121
Alignment:
| Q |
7 |
ccaaatgagtccctgagtaaataataatcatttttcacaaaagttttagcttccttgcagtcagacatttcaggagcagagccaagacgcatacaagcct |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1216568 |
ccaaatgagtccctgagtaaataataatcatttttcacaaaagttttagcttccttgcagtcagacatttcaggagcagagccaagacgcatacaagcct |
1216469 |
T |
|
| Q |
107 |
cgtagacttggaacgcaagccattggtcatgaagagtactgaaatgaatgcatacgtacataagtacatgtttatataagcatatgcttctttaagaacg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1216468 |
cgtagacttggaacgcaagccattggtcatgaagagtactgaaatgaatgcatacgtacgtaagtacatgtttatataagcatatgcttctttaagaacg |
1216369 |
T |
|
| Q |
207 |
cataacatattagtatttttgtactaccttaaatgaaatattagaaggcgaggtttcttgttgaacactccctcctcaaattgtactttgcgttttaaat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1216368 |
cataacatattagtatttttgtactaccttaaacgaaatgttagaaggcgaggtttcttgttgaacactccctcctcaaattgtactctgcgttttaaat |
1216269 |
T |
|
| Q |
307 |
cttttggatctacttccatatctgaagcgacaaaacaaaacattaggttttcttgttgaaccctccctccctcctcaaagtttggtttataaccaaaact |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1216268 |
cttttggatctacttccatatctgaagcgacaaaacaaaacattaggttttcttgttgaaccctccctccctcctcaaagtttggtttataaccaaaact |
1216169 |
T |
|
| Q |
407 |
gaatgcgttaaaactgaactgaatcgaaccatttccaatattcttcga |
454 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| || ||||| |
|
|
| T |
1216168 |
gaatgcgttaaaactgaactgaaccgaaccatttccaattttgttcga |
1216121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University