View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_160 (Length: 312)

Name: NF9264A_low_160
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_160
NF9264A_low_160
[»] chr7 (1 HSPs)
chr7 (25-312)||(47285664-47285951)


Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 25 - 312
Target Start/End: Original strand, 47285664 - 47285951
Alignment:
Q  25 acttagctaccgtaaatgtcacataataaaacaccctataccctaaaattttattggtgacatgccaaatcgttggccgcaccagatcaaactccaacga 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  47285664 acttagctaccgtaaatgtcacataataaaacaccctataccctaaaattttattggtgacatgccaaatcgttggccgcactagatcaaactccaacga 47285763  T
Q  125 caaatagggcggagaaaatgcctctaagcttaaatcggttggaaattcaactccggtaaagttgtaatttacatgtggattactaccacctactaaaact 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47285764 caaatagggcggagaaaatgcctctaagcttaaatcggttggaaattcaactccggtaaaattgtaatttacatgtggattactaccacctactaaaact 47285863  T
Q  225 cctccatctcttaacacaattgcagatgaatggtagagtctaggtctagaagccggtgacattacactaaaccgtttatctgatttgg 312  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  47285864 cttccatctcttaacacaattgcagatgaatggtagagtctaggtctagaagctggtgacattacactaaatcgtttatctgatttgg 47285951  T

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