View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_166 (Length: 309)

Name: NF9264A_low_166
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_166
NF9264A_low_166
[»] chr7 (1 HSPs)
chr7 (9-303)||(44461314-44461608)


Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 9 - 303
Target Start/End: Original strand, 44461314 - 44461608
Alignment:
Q  9 gagatgaacaagaaaaataagtgacaacnnnnnnnnnntacatcatgacaaaactcttctcggttttggttatctgtgtgattgtattggcacaccaaac 108  Q
    |||| |||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44461314 gagaagaacaagaaaaataagtgacaacaaaaaaaaaacacatcatgacaaaactcttctcggttttggttatctgtgtgattgtattggcacaccaaac 44461413  T
Q  109 agtcgcacaagaaaccaaaggtaaagatttaatcacaagggtatgccagctagcacagaaaaacagtgacctctgtgttgaagttctgtcatccgaccca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44461414 agtcgcacaagaaaccaaaggtaaagatttaatcacaagggtatgccagctagcacagaaaaacagtgacctctgtgttgaagttctgtcatccgaccca 44461513  T
Q  209 aaatccgcaaacgcagacgacattaatgatttggcaattatagcactaagagttgctgctagaaatgcttctgcaatgttaaacgacgtgaaatc 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44461514 aaatccgcaaacgcagacgacattaatgatttggcaattatagcactaagagttgctgctagaaatgcttctgcaatgttaaacgacgtgaaatc 44461608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University