View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_173 (Length: 302)

Name: NF9264A_low_173
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_173
NF9264A_low_173
[»] chr4 (14 HSPs)
chr4 (18-302)||(42533580-42533857)
chr4 (168-299)||(44432663-44432794)
chr4 (163-296)||(5274276-5274409)
chr4 (168-299)||(22047140-22047271)
chr4 (168-299)||(4839774-4839905)
chr4 (163-299)||(46692776-46692911)
chr4 (163-299)||(55326162-55326298)
chr4 (162-288)||(6639355-6639481)
chr4 (163-292)||(19248428-19248556)
chr4 (163-290)||(26069069-26069195)
chr4 (168-299)||(8894230-8894360)
chr4 (168-280)||(35417446-35417557)
chr4 (168-280)||(40996292-40996404)
chr4 (211-288)||(30219079-30219155)
[»] chr5 (13 HSPs)
chr5 (163-299)||(24835147-24835283)
chr5 (163-299)||(11723913-11724049)
chr5 (163-299)||(30607818-30607954)
chr5 (168-299)||(14343885-14344016)
chr5 (168-299)||(33434000-33434131)
chr5 (168-297)||(7314378-7314507)
chr5 (168-299)||(9403713-9403844)
chr5 (168-299)||(34455587-34455718)
chr5 (163-298)||(11766144-11766279)
chr5 (168-299)||(6269309-6269441)
chr5 (168-292)||(34870314-34870437)
chr5 (173-285)||(30422188-30422299)
chr5 (202-256)||(42748256-42748310)
[»] chr2 (11 HSPs)
chr2 (163-299)||(29223102-29223238)
chr2 (163-299)||(29336401-29336537)
chr2 (168-299)||(8684077-8684209)
chr2 (163-299)||(32522383-32522510)
chr2 (168-292)||(36668484-36668607)
chr2 (163-229)||(29226728-29226794)
chr2 (163-229)||(29340027-29340093)
chr2 (163-247)||(31757713-31757798)
chr2 (170-229)||(29792577-29792636)
chr2 (163-288)||(27256908-27257032)
chr2 (168-247)||(40199502-40199582)
[»] chr3 (12 HSPs)
chr3 (168-297)||(10407589-10407718)
chr3 (163-299)||(3587788-3587924)
chr3 (168-299)||(27031424-27031555)
chr3 (162-299)||(4755495-4755632)
chr3 (168-295)||(52045524-52045651)
chr3 (168-299)||(52308630-52308761)
chr3 (158-299)||(7653858-7653998)
chr3 (163-299)||(8614913-8615048)
chr3 (154-302)||(36470063-36470211)
chr3 (168-273)||(11263597-11263703)
chr3 (168-291)||(33247302-33247424)
chr3 (215-247)||(25804553-25804585)
[»] chr1 (12 HSPs)
chr1 (162-299)||(38122674-38122811)
chr1 (168-295)||(16833391-16833518)
chr1 (168-299)||(12168813-12168944)
chr1 (168-299)||(33492833-33492963)
chr1 (171-299)||(13218672-13218800)
chr1 (168-281)||(39453350-39453462)
chr1 (168-286)||(25242410-25242528)
chr1 (168-296)||(13829598-13829725)
chr1 (168-280)||(16129004-16129115)
chr1 (202-281)||(7062711-7062789)
chr1 (202-256)||(13249909-13249963)
chr1 (168-244)||(432869-432945)
[»] scaffold0015 (2 HSPs)
scaffold0015 (163-298)||(174033-174168)
scaffold0015 (163-298)||(185191-185326)
[»] chr8 (15 HSPs)
chr8 (168-295)||(27347440-27347567)
chr8 (168-298)||(3298195-3298325)
chr8 (163-299)||(27353515-27353651)
chr8 (163-299)||(28926781-28926917)
chr8 (168-296)||(22179903-22180031)
chr8 (162-299)||(8744005-8744142)
chr8 (168-299)||(9068804-9068935)
chr8 (163-299)||(36737498-36737633)
chr8 (168-299)||(1606596-1606726)
chr8 (168-239)||(16957901-16957972)
chr8 (163-221)||(28369584-28369642)
chr8 (163-247)||(4435537-4435621)
chr8 (168-280)||(24040006-24040117)
chr8 (168-247)||(21687382-21687462)
chr8 (168-247)||(21691706-21691786)
[»] chr7 (18 HSPs)
chr7 (168-299)||(22817832-22817963)
chr7 (161-299)||(7143044-7143182)
chr7 (168-298)||(31158914-31159044)
chr7 (162-299)||(23794481-23794618)
chr7 (168-299)||(10346943-10347074)
chr7 (163-299)||(2630809-2630944)
chr7 (168-299)||(12183259-12183390)
chr7 (168-299)||(22322521-22322652)
chr7 (163-299)||(19472897-19473033)
chr7 (168-299)||(45501268-45501400)
chr7 (168-297)||(2477074-2477203)
chr7 (163-295)||(2798182-2798314)
chr7 (168-299)||(31878015-31878146)
chr7 (168-248)||(31001376-31001456)
chr7 (177-249)||(8139848-8139920)
chr7 (168-246)||(31665265-31665343)
chr7 (163-256)||(24169396-24169489)
chr7 (163-256)||(20403074-20403168)
[»] chr6 (13 HSPs)
chr6 (168-299)||(26511138-26511269)
chr6 (168-299)||(26516254-26516385)
chr6 (168-298)||(3538441-3538571)
chr6 (163-295)||(34005893-34006025)
chr6 (168-295)||(9934626-9934753)
chr6 (163-295)||(24161866-24161997)
chr6 (171-296)||(26603622-26603746)
chr6 (168-281)||(31131280-31131392)
chr6 (211-293)||(15641761-15641842)
chr6 (168-256)||(2298290-2298378)
chr6 (168-298)||(5671675-5671804)
chr6 (202-256)||(18751341-18751395)
chr6 (168-298)||(24878410-24878539)
[»] scaffold0002 (1 HSPs)
scaffold0002 (168-299)||(354377-354508)
[»] scaffold1494 (1 HSPs)
scaffold1494 (163-299)||(954-1089)
[»] scaffold0019 (1 HSPs)
scaffold0019 (163-299)||(117268-117404)
[»] scaffold0059 (1 HSPs)
scaffold0059 (168-299)||(17110-17241)
[»] scaffold0014 (1 HSPs)
scaffold0014 (168-254)||(79922-80008)
[»] scaffold0744 (1 HSPs)
scaffold0744 (168-292)||(1851-1974)
[»] scaffold0458 (1 HSPs)
scaffold0458 (168-296)||(10197-10324)
[»] scaffold0871 (1 HSPs)
scaffold0871 (162-245)||(4325-4408)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 42533857 - 42533580
Alignment:
Q  18 acatcaatagtttgaggcgactagctcaccttgccaggtccggaccaaatcaacggcaaatggaatatgctaagaaatatgacaacacacgaattcacat 117  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  42533857 acatcaatagtttgaggcgactagctcaccttaccaggtccggaccaaatcaacggcaaatggaatatgctaagaaat-------cacacgaattcacat 42533765  T
Q  118 cttccgcaatggttttcaacagcaacacaaattcttgcttgatgcttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtga 217  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42533764 cttcctcaatggttttcaacagcaacacagattcttgcttgatgcttgataagtgctcaaaagtaacatatttcatgtgctaacttaggcaaattagtga 42533665  T
Q  218 cttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcctgattctacccattt 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42533664 cttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcctgattctatccattt 42533580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 168 - 299
Target Start/End: Complemental strand, 44432794 - 44432663
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44432794 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 44432695  T
Q  268 ccatttatgctttacatgcctgattctaccca 299  Q
    |||||||||||||||||| |||||||||||||    
T  44432694 ccatttatgctttacatgtctgattctaccca 44432663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 163 - 296
Target Start/End: Complemental strand, 5274409 - 5274276
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 262  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5274409 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaa 5274310  T
Q  263 ttttaccatttatgctttacatgcctgattctac 296  Q
    | ||||||||||||||||||||||||||||||||    
T  5274309 tattaccatttatgctttacatgcctgattctac 5274276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 168 - 299
Target Start/End: Original strand, 22047140 - 22047271
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||    
T  22047140 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgatttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 22047239  T
Q  268 ccatttatgctttacatgcctgattctaccca 299  Q
    ||||||||||||||||||||||||||||||||    
T  22047240 ccatttatgctttacatgcctgattctaccca 22047271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 168 - 299
Target Start/End: Complemental strand, 4839905 - 4839774
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||| | |||||    
T  4839905 aagtgctcaaaagtaacatatttcatgtgttaacttaggcgaattagtgatttgttttgcaagttatctgaggaaaagctaccatttgagtgcaatttta 4839806  T
Q  268 ccatttatgctttacatgcctgattctaccca 299  Q
    ||||||||||||||||||||||||||||||||    
T  4839805 ccatttatgctttacatgcctgattctaccca 4839774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 46692911 - 46692776
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 262  Q
    |||| ||||||||||| |||| |||||||||||| |||  ||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46692911 ttgataagtgctcaaa-gtaatatattttatgtgttaatctaggcattttagtgacttgttttgcaagttatctaaggaaaagctatcatttgagtgtat 46692813  T
Q  263 ttttaccatttatgctttacatgcctgattctaccca 299  Q
    || ||||||||||||||||||||||||||||||||||    
T  46692812 ttataccatttatgctttacatgcctgattctaccca 46692776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 55326162 - 55326298
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 262  Q
    |||| ||||||||||||||||||||||||||||  |||  |||| |  ||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  55326162 ttgataagtgctcaaaagtaacatattttatgtattaatctaggaagtttagtgacttgttctgcaagttatctaaggaaaaactaccatttgagtgtat 55326261  T
Q  263 ttttaccatttatgctttacatgcctgattctaccca 299  Q
    || ||||||||| ||||||||||||||||||||||||    
T  55326262 ttgtaccatttacgctttacatgcctgattctaccca 55326298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 162 - 288
Target Start/End: Original strand, 6639355 - 6639481
Alignment:
Q  162 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 261  Q
    ||||| |||||||||| ||||| |||||| ||||| ||| |||||||  || ||||||||||||||||||||||||||||||||||||||  |   ||||    
T  6639355 cttgataagtgctcaagagtaatatatttcatgtgttaatttaggcattttggtgacttgttttgcaagttatctaaggaaaagctaccaacttgttgta 6639454  T
Q  262 tttttaccatttatgctttacatgcct 288  Q
     ||||||||||||||||||||||||||    
T  6639455 attttaccatttatgctttacatgcct 6639481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 163 - 292
Target Start/End: Complemental strand, 19248556 - 19248428
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 262  Q
    |||| ||||||||||||| |||| |||||||||| |||  ||||||  |||||| ||||||||||||||||||||||||||| ||| || |||  || ||    
T  19248556 ttgataagtgctcaaaagcaacacattttatgtgttaatctaggcactttagtggcttgttttgcaagttatctaaggaaaatctatcaattg-ttgcat 19248458  T
Q  263 ttttaccatttatgctttacatgcctgatt 292  Q
    ||||||||||||||||||||||||||||||    
T  19248457 ttttaccatttatgctttacatgcctgatt 19248428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 163 - 290
Target Start/End: Original strand, 26069069 - 26069195
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctacc-atttgagtgta 261  Q
    |||| ||||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| ||||||||||||||| |||||||||| | ||  ||||     
T  26069069 ttgataagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctgcaagttatctaagaaaaagctacctaatt--gtgtt 26069166  T
Q  262 tttttaccatttatgctttacatgcctga 290  Q
     ||||||||||||||||||||||||||||    
T  26069167 attttaccatttatgctttacatgcctga 26069195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 168 - 299
Target Start/End: Original strand, 8894230 - 8894360
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    |||||||||||| | | |||||| ||||| ||| |||||||  |||||||||||||||||||||||||||||| |||||||| |||||| |||| || |     
T  8894230 aagtgctcaaaactgatatatttcatgtgttaatttaggcattttagtgacttgttttgcaagttatctaaggtaaagctacaatttga-tgtaattatg 8894328  T
Q  268 ccatttatgctttacatgcctgattctaccca 299  Q
    ||||||||||||||  ||||| ||| ||||||    
T  8894329 ccatttatgctttatgtgccttattgtaccca 8894360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 280
Target Start/End: Complemental strand, 35417557 - 35417446
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    |||||||||||||||  || ||| ||||| ||| | |||||  ||||||||||||||||||| |||||||||||||||| | ||||||  |||| ||| |    
T  35417557 aagtgctcaaaagtactatctttcatgtgttaaataaggcattttagtgacttgttttgcaaattatctaaggaaaagcaatcatttg-ttgtaatttga 35417459  T
Q  268 ccatttatgcttt 280  Q
    |||||||||||||    
T  35417458 ccatttatgcttt 35417446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 280
Target Start/End: Complemental strand, 40996404 - 40996292
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttg-caagttatctaaggaaaagctaccatttgagtgtattttt 266  Q
    |||||||||||||||  || ||| ||||| |||  |||| |  |||||||||||||||| |||||||||||||||||||| | ||||| | |||| |||     
T  40996404 aagtgctcaaaagtattatctttcatgtgttaaaataggtattttagtgacttgttttgtcaagttatctaaggaaaagcaatcattt-attgtaatttg 40996306  T
Q  267 accatttatgcttt 280  Q
    ||||||||||||||    
T  40996305 accatttatgcttt 40996292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 30219155 - 30219079
Alignment:
Q  211 ttagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcct 288  Q
    ||||||||||||| |||||||||||||||||||| | | || |||  |||| ||| || |||||||||||||||||||    
T  30219155 ttagtgacttgttctgcaagttatctaaggaaaaacaatcaattg-ttgtaatttcacaatttatgctttacatgcct 30219079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 24835147 - 24835283
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 262  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24835147 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 24835246  T
Q  263 ttttaccatttatgctttacatgcctgattctaccca 299  Q
    |||||||||||||||||||||||||||||||||||||    
T  24835247 ttttaccatttatgctttacatgcctgattctaccca 24835283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 11724049 - 11723913
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 262  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  11724049 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 11723950  T
Q  263 ttttaccatttatgctttacatgcctgattctaccca 299  Q
    |||||||||||||||||||||||||||||||||||||    
T  11723949 ttttaccatttatgctttacatgcctgattctaccca 11723913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 30607954 - 30607818
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 262  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30607954 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaa 30607855  T
Q  263 ttttaccatttatgctttacatgcctgattctaccca 299  Q
    | |||||||||||||||||||||||||||||||||||    
T  30607854 tattaccatttatgctttacatgcctgattctaccca 30607818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 168 - 299
Target Start/End: Original strand, 14343885 - 14344016
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  14343885 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 14343984  T
Q  268 ccatttatgctttacatgcctgattctaccca 299  Q
    ||||||||||||||||||||||||||||||||    
T  14343985 ccatttatgctttacatgcctgattctaccca 14344016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 168 - 299
Target Start/End: Original strand, 33434000 - 33434131
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33434000 aagtgcttaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagttaccatttgagtgtattttta 33434099  T
Q  268 ccatttatgctttacatgcctgattctaccca 299  Q
    ||||||||||||||||||||||||||||||||    
T  33434100 ccatttatgctttacatgcctgattctaccca 33434131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 168 - 297
Target Start/End: Original strand, 7314378 - 7314507
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  7314378 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 7314477  T
Q  268 ccatttatgctttacatgcctgattctacc 297  Q
    ||||||||||||||||||||||||||||||    
T  7314478 ccatttatgctttacatgcctgattctacc 7314507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 168 - 299
Target Start/End: Original strand, 9403713 - 9403844
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  9403713 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatatta 9403812  T
Q  268 ccatttatgctttacatgcctgattctaccca 299  Q
    | ||||||||||||||||||||||||||||||    
T  9403813 ctatttatgctttacatgcctgattctaccca 9403844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 168 - 299
Target Start/End: Original strand, 34455587 - 34455718
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  34455587 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatatta 34455686  T
Q  268 ccatttatgctttacatgcctgattctaccca 299  Q
    |||||||||||||||||||| |||||||||||    
T  34455687 ccatttatgctttacatgcccgattctaccca 34455718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 163 - 298
Target Start/End: Original strand, 11766144 - 11766279
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 262  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |     
T  11766144 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgactcgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 11766243  T
Q  263 ttttaccatttatgctttacatgcctgattctaccc 298  Q
    ||||||||||||||||||||||| ||||||||||||    
T  11766244 ttttaccatttatgctttacatgtctgattctaccc 11766279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 168 - 299
Target Start/End: Original strand, 6269309 - 6269441
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta-ttttt 266  Q
    ||||||||||||||||||||||| ||||| |||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  6269309 aagtgctcaaaagtaacatatttcatgtgttaacctaggcaatttagtgacttgttttgcaagttatctaaggaaaatctaccatttgagtgtatttttt 6269408  T
Q  267 accatttatgctttacatgcctgattctaccca 299  Q
    ||||||||||||||||||| |||||||||||||    
T  6269409 accatttatgctttacatgtctgattctaccca 6269441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 168 - 292
Target Start/End: Complemental strand, 34870437 - 34870314
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||||||||| |||  ||||||  |||||| ||||||||||||||||||||||||||| ||| || |||  || |||||||    
T  34870437 aagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtggcttgttttgcaagttatctaaggaaaaactatcaattg-ttgcattttta 34870339  T
Q  268 ccatttatgctttacatgcctgatt 292  Q
    |||||||||||||||||| ||||||    
T  34870338 ccatttatgctttacatgtctgatt 34870314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 173 - 285
Target Start/End: Original strand, 30422188 - 30422299
Alignment:
Q  173 ctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttaccatt 272  Q
    ||||||||||| |||||| ||||| ||| |||||||  |||||||||||||||||||||||||||||||||| ||||||||| |  ||| |||| |||||    
T  30422188 ctcaaaagtaatatatttcatgtgttaatttaggcattttagtgacttgttttgcaagttatctaaggaaaaactaccattt-atcgtaattttgccatt 30422286  T
Q  273 tatgctttacatg 285  Q
    |||||||||||||    
T  30422287 tatgctttacatg 30422299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 42748310 - 42748256
Alignment:
Q  202 ttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttga 256  Q
    |||||||  ||||| |||||||||||||||||| |||||||||||||| ||||||    
T  42748310 ttaggcactttagttacttgttttgcaagttatttaaggaaaagctacaatttga 42748256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 29223102 - 29223238
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 262  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29223102 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 29223201  T
Q  263 ttttaccatttatgctttacatgcctgattctaccca 299  Q
    |||||||||||||||||||||||||||||||||||||    
T  29223202 ttttaccatttatgctttacatgcctgattctaccca 29223238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 29336401 - 29336537
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 262  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29336401 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 29336500  T
Q  263 ttttaccatttatgctttacatgcctgattctaccca 299  Q
    |||||||||||||||||||||||||||||||||||||    
T  29336501 ttttaccatttatgctttacatgcctgattctaccca 29336537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 168 - 299
Target Start/End: Complemental strand, 8684209 - 8684077
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat-tttt 266  Q
    |||||||||||||||| |||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  8684209 aagtgctcaaaagtaaaatatttcatgtgttaacttaggaaaattagtgacttgttttgcaagttatctaaggaaaagctaccgtttgagtgtatttttt 8684110  T
Q  267 accatttatgctttacatgcctgattctaccca 299  Q
    |||||||||||||||||| ||||||||||||||    
T  8684109 accatttatgctttacatacctgattctaccca 8684077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 32522383 - 32522510
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 262  Q
    |||| ||||||||||||||||||||||||||||| ||| ||||         |||||||||||||||||||||||||||||||||| |||||||||||||    
T  32522383 ttgataagtgctcaaaagtaacatattttatgtgttaatttag---------tgacttgttttgcaagttatctaaggaaaagctatcatttgagtgtat 32522473  T
Q  263 ttttaccatttatgctttacatgcctgattctaccca 299  Q
    || ||||||||||||||||||||||||||||||||||    
T  32522474 ttataccatttatgctttacatgcctgattctaccca 32522510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 168 - 292
Target Start/End: Complemental strand, 36668607 - 36668484
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||| ||||||||||||||| |||  ||||||  |||||| ||||||||||||||||||||||||||||||| || |||  || |||||||    
T  36668607 aagtgctcaaaagcaacatattttatgtgttaatctaggcattttagtggcttgttttgcaagttatctaaggaaaagctatcaattg-ttgcattttta 36668509  T
Q  268 ccatttatgctttacatgcctgatt 292  Q
    |||||||||||||||||||||||||    
T  36668508 ccatttatgctttacatgcctgatt 36668484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 29226728 - 29226794
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaa 229  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  29226728 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaa 29226794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 29340027 - 29340093
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaa 229  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  29340027 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaa 29340093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 247
Target Start/End: Original strand, 31757713 - 31757798
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttatctaaggaaaagct 247  Q
    |||| |||||||||||||| | |||||| ||||| ||  |||||||  |||||||||||||||||||| ||||||| |||||||||    
T  31757713 ttgataagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgacttgttttgcaagattatctatggaaaagct 31757798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 29792577 - 29792636
Alignment:
Q  170 gtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaa 229  Q
    ||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| |||||    
T  29792577 gtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctgcaa 29792636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 288
Target Start/End: Original strand, 27256908 - 27257032
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 262  Q
    |||| |||||||||||||| | ||||||  | || ||| |||||||  ||||||||||||| | ||||||||||| ||||||||| | |||| | || ||    
T  27256908 ttgataagtgctcaaaagtgatatatttcttatgttaatttaggcattttagtgacttgttctacaagttatctatggaaaagctccaatttta-tgcat 27257006  T
Q  263 ttttaccatttatgctttacatgcct 288  Q
    ||  ||||||||||||| | ||||||    
T  27257007 ttacaccatttatgcttcatatgcct 27257032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 40199502 - 40199582
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttatctaaggaaaagct 247  Q
    |||||||||||||| | |||||| ||||| ||  |||||||  |||||| ||||||||||||| ||||||| || ||||||    
T  40199502 aagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgccttgttttgcaagattatctatggcaaagct 40199582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 168 - 297
Target Start/End: Complemental strand, 10407718 - 10407589
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10407718 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 10407619  T
Q  268 ccatttatgctttacatgcctgattctacc 297  Q
    ||||||||||||||||||||||||||||||    
T  10407618 ccatttatgctttacatgcctgattctacc 10407589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 3587788 - 3587924
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 262  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  3587788 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 3587887  T
Q  263 ttttaccatttatgctttacatgcctgattctaccca 299  Q
    |||||||||||||||||||||||||||||||||||||    
T  3587888 ttttaccatttatgctttacatgcctgattctaccca 3587924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 168 - 299
Target Start/End: Complemental strand, 27031555 - 27031424
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  27031555 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatatta 27031456  T
Q  268 ccatttatgctttacatgcctgattctaccca 299  Q
    ||||||||||||||||||||||||||||||||    
T  27031455 ccatttatgctttacatgcctgattctaccca 27031424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 4755632 - 4755495
Alignment:
Q  162 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 261  Q
    ||||| ||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4755632 cttgataagtgctcaaaagtaacatatttcatgtgttaaattaggcaaattagtgacttgttttgcaagttatctaaggaaaagttaccatttgagtgta 4755533  T
Q  262 tttttaccatttatgctttacatgcctgattctaccca 299  Q
    |||||||||||||||| |||||||||||||||||||||    
T  4755532 tttttaccatttatgccttacatgcctgattctaccca 4755495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 168 - 295
Target Start/End: Complemental strand, 52045651 - 52045524
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52045651 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaatttgtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 52045552  T
Q  268 ccatttatgctttacatgcctgattcta 295  Q
    ||||||||||||||||||||||||||||    
T  52045551 ccatttatgctttacatgcctgattcta 52045524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 168 - 299
Target Start/End: Complemental strand, 52308761 - 52308630
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  52308761 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgctttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 52308662  T
Q  268 ccatttatgctttacatgcctgattctaccca 299  Q
    |||||||||||||||||| |||||||||||||    
T  52308661 ccatttatgctttacatgtctgattctaccca 52308630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 158 - 299
Target Start/End: Complemental strand, 7653998 - 7653858
Alignment:
Q  158 gatgcttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgag 257  Q
    |||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7653998 gatgattgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgag 7653899  T
Q  258 tgtatttttaccatttatgctttacatgcctgattctaccca 299  Q
    || | |||||||||||||||||| ||||||||||||||||||    
T  7653898 tgcaattttaccatttatgcttt-catgcctgattctaccca 7653858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 8614913 - 8615048
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 262  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |     
T  8614913 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttt-gcaagttatctaaggaaaagctaccatttgagtgcaa 8615011  T
Q  263 ttttaccatttatgctttacatgcctgattctaccca 299  Q
    |||||||||||||||||||||||||||||||||||||    
T  8615012 ttttaccatttatgctttacatgcctgattctaccca 8615048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 154 - 302
Target Start/End: Complemental strand, 36470211 - 36470063
Alignment:
Q  154 gcttgatgcttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatt 253  Q
    |||||||| |||| ||||||||||||||| ||||||| ||||| |||  ||||||| ||||||| ||||||||||||||||| |||||||||||||||||    
T  36470211 gcttgatgtttgataagtgctcaaaagtaccatatttaatgtgttaatctaggcaatttagtgatttgttttgcaagttatccaaggaaaagctaccatt 36470112  T
Q  254 tgagtgtatttttaccatttatgctttacatgcctgattctacccattt 302  Q
    ||||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  36470111 tgagtgtatttataccaattatgctttacatgcctgattctaccaattt 36470063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 168 - 273
Target Start/End: Complemental strand, 11263703 - 11263597
Alignment:
Q  168 aagtgctcaaaa-gtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttt 266  Q
    |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||    
T  11263703 aagtgctcaaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggtaacgctagcatttgagtgtattttt 11263604  T
Q  267 accattt 273  Q
    |||||||    
T  11263603 accattt 11263597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 168 - 291
Target Start/End: Original strand, 33247302 - 33247424
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| ||||||||||||||||||||||||| |  |  ||||  |||||    
T  33247302 aagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctgcaagttatctaaggaaaagctactaaat-tgtgttctttta 33247400  T
Q  268 ccatttatgctttacatgcctgat 291  Q
    ||||||||||||||||||||||||    
T  33247401 ccatttatgctttacatgcctgat 33247424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 247
Target Start/End: Original strand, 25804553 - 25804585
Alignment:
Q  215 tgacttgttttgcaagttatctaaggaaaagct 247  Q
    ||||||||||||||||||||||| |||||||||    
T  25804553 tgacttgttttgcaagttatctatggaaaagct 25804585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 38122811 - 38122674
Alignment:
Q  162 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 261  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38122811 cttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 38122712  T
Q  262 tttttaccatttatgctttacatgcctgattctaccca 299  Q
     | |||||||||||||||||||||||||||||||||||    
T  38122711 atattaccatttatgctttacatgcctgattctaccca 38122674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 168 - 295
Target Start/End: Complemental strand, 16833518 - 16833391
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16833518 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgattgtattttta 16833419  T
Q  268 ccatttatgctttacatgcctgattcta 295  Q
    ||||||||||||||||||||||||||||    
T  16833418 ccatttatgctttacatgcctgattcta 16833391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 168 - 299
Target Start/End: Complemental strand, 12168944 - 12168813
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||    
T  12168944 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgatttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 12168845  T
Q  268 ccatttatgctttacatgcctgattctaccca 299  Q
    ||||||||||||||||||||||||||||||||    
T  12168844 ccatttatgctttacatgcctgattctaccca 12168813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 168 - 299
Target Start/End: Complemental strand, 33492963 - 33492833
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  33492963 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 33492864  T
Q  268 ccatttatgctttacatgcctgattctaccca 299  Q
    ||||||||||||| ||||||||||||||||||    
T  33492863 ccatttatgcttt-catgcctgattctaccca 33492833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 171 - 299
Target Start/End: Complemental strand, 13218800 - 13218672
Alignment:
Q  171 tgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttacca 270  Q
    ||||||||| |||||||||| ||||| |||  |||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  13218800 tgctcaaaactaacatatttcatgtgttaatctaggtaatttagtgacttgttttgaaagttatctaaggaaaagctaccatttgagtgtatttatacca 13218701  T
Q  271 tttatgctttacatgcctgattctaccca 299  Q
    |||||||||||||||||||||||||||||    
T  13218700 tttatgctttacatgcctgattctaccca 13218672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 168 - 281
Target Start/End: Original strand, 39453350 - 39453462
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    |||||||||||||||| |||| ||||||| ||| ||||| |  |||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||     
T  39453350 aagtgctcaaaagtaatatatgttatgtgttaatttaggtattttagtgacttgttttgcaagttatctaaggaaaaactaccatttg-ttgtaattttg 39453448  T
Q  268 ccatttatgcttta 281  Q
    ||||||||||||||    
T  39453449 ccatttatgcttta 39453462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 286
Target Start/End: Original strand, 25242410 - 25242528
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    |||||||||||| ||||||||| |||||| ||| |||||||  ||| ||||||||| ||||||||||||||||||||||||| |||   |  | ||||||    
T  25242410 aagtgctcaaaactaacatattctatgtgttaatttaggcattttaatgacttgttctgcaagttatctaaggaaaagctactattgttgcattttttta 25242509  T
Q  268 ccatttatgctttacatgc 286  Q
    |||||||||||||| ||||    
T  25242510 ccatttatgctttaaatgc 25242528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 168 - 296
Target Start/End: Original strand, 13829598 - 13829725
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||| |||| |||||| ||||| ||| ||| |||  ||||| ||||||  | |||||||||| |||||||||||||| || | |||| |||||    
T  13829598 aagtgctcaaaggtaatatatttcatgtgttaaattatgcattttagtaacttgtcctacaagttatctgaggaaaagctaccaatt-attgtactttta 13829696  T
Q  268 ccatttatgctttacatgcctgattctac 296  Q
    | |||| ||||||||||||||||||||||    
T  13829697 ctatttgtgctttacatgcctgattctac 13829725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 168 - 280
Target Start/End: Original strand, 16129004 - 16129115
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||| ||| ||| ||||| |||  ||||||  ||| |||||||||||||||||||||||||||||||| | ||||||  |||| ||| |    
T  16129004 aagtgctcaaaagtaccatctttcatgtgttaaaataggcattttaatgacttgttttgcaagttatctaaggaaaagcaatcatttg-ttgtaatttga 16129102  T
Q  268 ccatttatgcttt 280  Q
    |||||||||||||    
T  16129103 ccatttatgcttt 16129115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 281
Target Start/End: Original strand, 7062711 - 7062789
Alignment:
Q  202 ttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttaccatttatgcttta 281  Q
    |||||||  ||||| |||||||||||||||||||||| ||||| |||| |||||| || ||   ||||||||||||||||    
T  7062711 ttaggcactttagttacttgttttgcaagttatctaaagaaaaactacaatttga-tgaataaataccatttatgcttta 7062789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 13249963 - 13249909
Alignment:
Q  202 ttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttga 256  Q
    |||||||  ||||| ||||||||| |||||||| |||||||||||||| ||||||    
T  13249963 ttaggcactttagttacttgttttacaagttatttaaggaaaagctacaatttga 13249909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 432945 - 432869
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaa 244  Q
    |||||||||||||| | ||||||  | || ||| |||||||  ||||||||||||| | ||||||||||| ||||||    
T  432945 aagtgctcaaaagtgatatatttcttatgttaatttaggcattttagtgacttgttctacaagttatctatggaaaa 432869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 163 - 298
Target Start/End: Original strand, 174033 - 174168
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 262  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  174033 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 174132  T
Q  263 ttttaccatttatgctttacatgcctgattctaccc 298  Q
    ||||||||||||||||||||||||||||||||||||    
T  174133 ttttaccatttatgctttacatgcctgattctaccc 174168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 163 - 298
Target Start/End: Original strand, 185191 - 185326
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 262  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||| |     
T  185191 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggaaaattaatgacttgttttgcaagttatataaggaaaagctaccatttgagtgcaa 185290  T
Q  263 ttttaccatttatgctttacatgcctgattctaccc 298  Q
    ||||||||||||||||||||||||||||||||||||    
T  185291 ttttaccatttatgctttacatgcctgattctaccc 185326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 27347440 - 27347567
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27347440 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 27347539  T
Q  268 ccatttatgctttacatgcctgattcta 295  Q
    ||||||||||||||||||||||||||||    
T  27347540 ccatttatgctttacatgcctgattcta 27347567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 168 - 298
Target Start/End: Original strand, 3298195 - 3298325
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3298195 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtttattttta 3298294  T
Q  268 ccatttatgctttacatgcctgattctaccc 298  Q
    |||||||||||||||||| ||||||||||||    
T  3298295 ccatttatgctttacatgtctgattctaccc 3298325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 27353515 - 27353651
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 262  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |     
T  27353515 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctatcatttgagtgcaa 27353614  T
Q  263 ttttaccatttatgctttacatgcctgattctaccca 299  Q
    |||||||||||||||||||||||||||||||||||||    
T  27353615 ttttaccatttatgctttacatgcctgattctaccca 27353651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 28926917 - 28926781
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 262  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |     
T  28926917 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgactttttttgcaagttatctaaggaaaagctaccatttgagtgcaa 28926818  T
Q  263 ttttaccatttatgctttacatgcctgattctaccca 299  Q
    |||||||||||||||||||||||||||||||||||||    
T  28926817 ttttaccatttatgctttacatgcctgattctaccca 28926781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 168 - 296
Target Start/End: Original strand, 22179903 - 22180031
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||    
T  22179903 aagtgctcaaaagtaacatattttatgcgttaacttaggcaaattagtgacttgtttcgcaagttatctaaggaaaatctaccatttgagtgtaatttta 22180002  T
Q  268 ccatttatgctttacatgcctgattctac 296  Q
    |||||||||||||||||||||||||||||    
T  22180003 ccatttatgctttacatgcctgattctac 22180031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 8744142 - 8744005
Alignment:
Q  162 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 261  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8744142 cttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattattgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 8744043  T
Q  262 tttttaccatttatgctttacatgcctgattctaccca 299  Q
     | |||  ||||||||||||||||||||||||||||||    
T  8744042 atattattatttatgctttacatgcctgattctaccca 8744005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 168 - 299
Target Start/End: Complemental strand, 9068935 - 9068804
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    |||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||    
T  9068935 aagtgcccaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatccaaggaaaagctaccatttgagtgcaacttta 9068836  T
Q  268 ccatttatgctttacatgcctgattctaccca 299  Q
    ||||||||||||||||||||||||||||||||    
T  9068835 ccatttatgctttacatgcctgattctaccca 9068804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 36737633 - 36737498
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 262  Q
    |||| ||||||| ||||||| ||||||||||||| |||  ||||||  || |||||||||| ||||||||||||||||||| |||| || |||  |||||    
T  36737633 ttgataagtgctaaaaagtaccatattttatgtgttaatctaggcattttggtgacttgttctgcaagttatctaaggaaaggctatcaattg-ttgtat 36737535  T
Q  263 ttttaccatttatgctttacatgcctgattctaccca 299  Q
     | ||||||||||||||||||||||||||||||||||    
T  36737534 ctataccatttatgctttacatgcctgattctaccca 36737498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 168 - 299
Target Start/End: Original strand, 1606596 - 1606726
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    |||||||||||||||| |||||| ||||| ||| |||||||  ||||||||||||| ||||||||||||||| |||||||  || |||  |||| |||||    
T  1606596 aagtgctcaaaagtaatatatttcatgtgttaatttaggcattttagtgacttgttctgcaagttatctaagaaaaagctttcaattg-ttgtactttta 1606694  T
Q  268 ccatttatgctttacatgcctgattctaccca 299  Q
    ||||||||| |||||||| |||||||||||||    
T  1606695 ccatttatgttttacatgtctgattctaccca 1606726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 16957901 - 16957972
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaag 239  Q
    ||||||||||||||||||||||||||| | |||  |||||| ||||||||||||||||||||||||||||||    
T  16957901 aagtgctcaaaagtaacatattttatgcgttaatctaggcatattagtgacttgttttgcaagttatctaag 16957972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 28369584 - 28369642
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttg 221  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  28369584 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggtaaattagtgacttg 28369642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 4435621 - 4435537
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagct 247  Q
    |||| |||||||||||||| | ||||||  |||| ||| |||||||  ||||||| ||||||||||||||||||| |||||||||    
T  4435621 ttgataagtgctcaaaagtgatatatttcttgtgttaatttaggcactttagtgatttgttttgcaagttatctatggaaaagct 4435537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 280
Target Start/End: Original strand, 24040006 - 24040117
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    |||||||||||||||  || ||| ||||| |||  ||||||  |||||||||||||||| ||||||| ||||||||||| | ||||||  |||| ||| |    
T  24040006 aagtgctcaaaagtattatctttcatgtgttaaaataggcattttagtgacttgttttgtaagttatataaggaaaagcaatcatttg-ttgtaatttga 24040104  T
Q  268 ccatttatgcttt 280  Q
    |||||||||||||    
T  24040105 ccatttatgcttt 24040117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 21687382 - 21687462
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttatctaaggaaaagct 247  Q
    |||||||||||||| | |||||| ||||| ||  |||||||  |||||||||||||||||||| ||||||| |||||||||    
T  21687382 aagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgacttgttttgcaagattatctatggaaaagct 21687462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 21691706 - 21691786
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttatctaaggaaaagct 247  Q
    |||||||||||||| | |||||| ||||| ||  |||||||  |||||||||||||||||||| ||||||| |||||||||    
T  21691706 aagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgacttgttttgcaagattatctatggaaaagct 21691786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 5e-59; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 168 - 299
Target Start/End: Original strand, 22817832 - 22817963
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||| | ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22817832 aagtgctcaaaagtaacatatttcaggtgttaacttaggcaaaatagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 22817931  T
Q  268 ccatttatgctttacatgcctgattctaccca 299  Q
    ||||||||||||||||||||||||||||||||    
T  22817932 ccatttatgctttacatgcctgattctaccca 22817963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 161 - 299
Target Start/End: Original strand, 7143044 - 7143182
Alignment:
Q  161 gcttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgt 260  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7143044 gcttgataagtgctcaaaagtaacatatttcatgtgttaacttaggaaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgt 7143143  T
Q  261 atttttaccatttatgctttacatgcctgattctaccca 299  Q
    | | |||||||||||||||||||||||||||||||||||    
T  7143144 aatattaccatttatgctttacatgcctgattctaccca 7143182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 168 - 298
Target Start/End: Complemental strand, 31159044 - 31158914
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  31159044 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 31158945  T
Q  268 ccatttatgctttacatgcctgattctaccc 298  Q
    |||||||||||||||||||||||||||||||    
T  31158944 ccatttatgctttacatgcctgattctaccc 31158914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 162 - 299
Target Start/End: Original strand, 23794481 - 23794618
Alignment:
Q  162 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 261  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23794481 cttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgca 23794580  T
Q  262 tttttaccatttatgctttacatgcctgattctaccca 299  Q
     ||||||||||||| |||||||||||||||||||||||    
T  23794581 attttaccatttattctttacatgcctgattctaccca 23794618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 168 - 299
Target Start/End: Complemental strand, 10347074 - 10346943
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  10347074 aagtgctcaaaagtaacatttttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 10346975  T
Q  268 ccatttatgctttacatgcctgattctaccca 299  Q
    ||||||||||||||||||||||||||||||||    
T  10346974 ccatttatgctttacatgcctgattctaccca 10346943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 2630809 - 2630944
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 262  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  2630809 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 2630908  T
Q  263 ttttaccatttatgctttacatgcctgattctaccca 299  Q
    |||||||||||||||||| ||||||||||||||||||    
T  2630909 ttttaccatttatgcttt-catgcctgattctaccca 2630944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 168 - 299
Target Start/End: Original strand, 12183259 - 12183390
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||| ||||| ||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12183259 aagtgctcaaaagtaacatatttcatgtgttaacttatgtaaattagtgacctgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 12183358  T
Q  268 ccatttatgctttacatgcctgattctaccca 299  Q
    |||||||||||| |||||||||||||||||||    
T  12183359 ccatttatgcttcacatgcctgattctaccca 12183390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 168 - 299
Target Start/End: Complemental strand, 22322652 - 22322521
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  22322652 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagcgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 22322553  T
Q  268 ccatttatgctttacatgcctgattctaccca 299  Q
    ||||||||||||||||| ||| ||||||||||    
T  22322552 ccatttatgctttacatacctaattctaccca 22322521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 19473033 - 19472897
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 262  Q
    |||| ||||||| ||||||||||||||| ||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  19473033 ttgataagtgcttaaaagtaacatatttcatgtgttaatttaggcaaattagtgacttattttgcaagttatctaaggaaaagctaccttttgagtgtat 19472934  T
Q  263 ttttaccatttatgctttacatgcctgattctaccca 299  Q
    |||||||||||||||||||||||||| ||||||||||    
T  19472933 ttttaccatttatgctttacatgcctaattctaccca 19472897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 168 - 299
Target Start/End: Complemental strand, 45501400 - 45501268
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgactt-gttttgcaagttatctaaggaaaagctaccatttgagtgtattttt 266  Q
    ||||||||||||||||||||||| |||||||||  ||||||| |||||||||| |||||| || |||||||||||||||||| ||||||||||||||| |    
T  45501400 aagtgctcaaaagtaacatatttcatgtgctaatctaggcaatttagtgacttagttttgaaatttatctaaggaaaagctatcatttgagtgtatttat 45501301  T
Q  267 accatttatgctttacatgcctgattctaccca 299  Q
    |||||||||| ||||||||||||||||||||||    
T  45501300 accatttatgttttacatgcctgattctaccca 45501268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 168 - 297
Target Start/End: Original strand, 2477074 - 2477203
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||| ||||||||||||||||||||| | |||| ||||||  ||||||||||||||||||| ||||||||| ||||||||| | |||||||||||||||    
T  2477074 aagtgatcaaaagtaacatattttatgcgttaacctaggcattttagtgacttgttttgcaacttatctaagaaaaagctactaattgagtgtattttta 2477173  T
Q  268 ccatttatgctttacatgcctgattctacc 297  Q
    ||||||||| ||||||||||||||||||||    
T  2477174 ccatttatgttttacatgcctgattctacc 2477203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 163 - 295
Target Start/End: Complemental strand, 2798314 - 2798182
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 262  Q
    |||| ||||| |||||| |||||||||||||||| |||  ||||||| ||||||||||||| |||||||||||||||||||| | | |||||||||||||    
T  2798314 ttgataagtgttcaaaaataacatattttatgtgttaatctaggcaatttagtgacttgttctgcaagttatctaaggaaaaacaatcatttgagtgtat 2798215  T
Q  263 ttttaccatttatgctttacatgcctgattcta 295  Q
    || ||||||||||||||||||| ||||||||||    
T  2798214 ttataccatttatgctttacatacctgattcta 2798182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 168 - 299
Target Start/End: Original strand, 31878015 - 31878146
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||| |||  ||| |||||||||||| |||  |||| || |||||||||| |  ||||||||||||| |||||||||| ||||||||||||||| ||    
T  31878015 aagtgcttaaagttaatatattttatgtgttaatataggtaatttagtgacttatcctgcaagttatctagggaaaagctatcatttgagtgtatttata 31878114  T
Q  268 ccatttatgctttacatgcctgattctaccca 299  Q
    ||||||||||||||||||||||||||||||||    
T  31878115 ccatttatgctttacatgcctgattctaccca 31878146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 31001456 - 31001376
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagcta 248  Q
    ||||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| | ||||||||||||| ||||||||    
T  31001456 aagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctccaagttatctaagaaaaagcta 31001376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 8139920 - 8139848
Alignment:
Q  177 aaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctac 249  Q
    ||||||| |||||| ||||| ||  |||||||  |||||||||| ||||||| ||||||||||||||||||||    
T  8139920 aaagtaatatatttcatgtgttattttaggcactttagtgacttattttgcaggttatctaaggaaaagctac 8139848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 246
Target Start/End: Complemental strand, 31665343 - 31665265
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagc 246  Q
    |||||||||||||||| |||||| ||||| |||  || |||    ||||||||||| ||||||||||||||||||||||    
T  31665343 aagtgctcaaaagtaatatatttcatgtgttaaaatatgcattacagtgacttgttatgcaagttatctaaggaaaagc 31665265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 256
Target Start/End: Complemental strand, 24169489 - 24169396
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttga 256  Q
    |||| |||||||||||||| | |||||| ||||  ||  |||||||  ||||||| |||||||||||||||  |||||||||| ||| ||||||    
T  24169489 ttgataagtgctcaaaagtgatatatttcatgtattattttaggcactttagtgatttgttttgcaagttacttaaggaaaagttacaatttga 24169396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 256
Target Start/End: Original strand, 20403074 - 20403168
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaa-ggaaaagctaccatttga 256  Q
    |||| |||||||||||||| | ||||||  |||| ||| |||||||  ||||||| ||||||||||| |||  ||| ||||||||||| ||||||    
T  20403074 ttgataagtgctcaaaagtgatatatttcttgtgttaatttaggcactttagtgatttgttttgcaaattacttaagggaaaagctacaatttga 20403168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 5e-59; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 168 - 299
Target Start/End: Complemental strand, 26511269 - 26511138
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  26511269 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtataatttta 26511170  T
Q  268 ccatttatgctttacatgcctgattctaccca 299  Q
    ||||||||||||||||||||||||||||||||    
T  26511169 ccatttatgctttacatgcctgattctaccca 26511138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 168 - 299
Target Start/End: Complemental strand, 26516385 - 26516254
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  26516385 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtataatttta 26516286  T
Q  268 ccatttatgctttacatgcctgattctaccca 299  Q
    ||||||||||||||||||||||||||||||||    
T  26516285 ccatttatgctttacatgcctgattctaccca 26516254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 168 - 298
Target Start/End: Original strand, 3538441 - 3538571
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||    
T  3538441 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgactcgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 3538540  T
Q  268 ccatttatgctttacatgcctgattctaccc 298  Q
    |||||||||||||||||||||||||||||||    
T  3538541 ccatttatgctttacatgcctgattctaccc 3538571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 163 - 295
Target Start/End: Original strand, 34005893 - 34006025
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 262  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |     
T  34005893 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaatgctaccatttgagtgcaa 34005992  T
Q  263 ttttaccatttatgctttacatgcctgattcta 295  Q
    |||||||||||||||||||||||||||||||||    
T  34005993 ttttaccatttatgctttacatgcctgattcta 34006025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 168 - 295
Target Start/End: Complemental strand, 9934753 - 9934626
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||| ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9934753 aagtgcttaaaagtaacatatttcatgtgttaacttaggtaaattagtgacttgttttgcaagttatctaaggaaaaactaccatttgagtgtattttta 9934654  T
Q  268 ccatttatgctttacatgcctgattcta 295  Q
    ||||||||||||||||||||||||||||    
T  9934653 ccatttatgctttacatgcctgattcta 9934626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 163 - 295
Target Start/End: Complemental strand, 24161997 - 24161866
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 262  Q
    |||| |||||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  24161997 ttgataagtgctcaaaagtaacat--tttatgtgttaacttaggcaaattagagacttgttttgcaagttatataaggaaaagctaccatttgagtgtat 24161900  T
Q  263 -ttttaccatttatgctttacatgcctgattcta 295  Q
     |||||||||||||||||||||||||||||||||    
T  24161899 tttttaccatttatgctttacatgcctgattcta 24161866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 171 - 296
Target Start/End: Original strand, 26603622 - 26603746
Alignment:
Q  171 tgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttacca 270  Q
    ||||||||||| | |||||| ||||| ||| |||||||  ||||||||||||||||||||||||||||||||||  ||||| |||  |||| ||||||||    
T  26603622 tgctcaaaagtgatatatttcatgtgttaatttaggcattttagtgacttgttttgcaagttatctaaggaaaatgtaccaattg-ttgtacttttacca 26603720  T
Q  271 tttatgctttacatgcctgattctac 296  Q
    ||||||||||||||||||||||||||    
T  26603721 tttatgctttacatgcctgattctac 26603746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 168 - 281
Target Start/End: Original strand, 31131280 - 31131392
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||| ||||||||||||||||||||| |||  ||||||  |||||||||||||||||||||||||||||||||| ||| || |||  ||||||| ||    
T  31131280 aagtgcttaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttttgcaagttatctaaggaaaatctatcaattg-ttgtatttata 31131378  T
Q  268 ccatttatgcttta 281  Q
    ||||||||||||||    
T  31131379 ccatttatgcttta 31131392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 211 - 293
Target Start/End: Original strand, 15641761 - 15641842
Alignment:
Q  211 ttagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcctgattc 293  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||  |||| |||||||||||||||||||||||||||||||    
T  15641761 ttagtgacttgttctgcaagttatctaaggaaaagctaccaattg-ttgtacttttaccatttatgctttacatgcctgattc 15641842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 2298290 - 2298378
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttga 256  Q
    ||||| |||||||| | |||||| ||||| ||  |||| ||  |||||||||||||||||||||||||||||||||| |||| ||||||    
T  2298290 aagtgttcaaaagtgatatatttcatgtgttattttagacactttagtgacttgttttgcaagttatctaaggaaaaactacaatttga 2298378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 298
Target Start/End: Complemental strand, 5671804 - 5671675
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    |||||||||||||| | ||||||  | || ||| |||||||  ||||||||||||| | ||||||||||| ||||||||| | |||| | || ||||  |    
T  5671804 aagtgctcaaaagtgatatatttcttatgttaatttaggcattttagtgacttgttctacaagttatctatggaaaagctccaatttta-tgcatttaca 5671706  T
Q  268 ccatttatgctttacatgcctgattctaccc 298  Q
    |||||||||||| | |||||| | |||||||    
T  5671705 ccatttatgcttcatatgccttactctaccc 5671675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 18751395 - 18751341
Alignment:
Q  202 ttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttga 256  Q
    |||||||  ||||| |||||||||||||||||| ||||||||| |||| ||||||    
T  18751395 ttaggcactttagttacttgttttgcaagttatttaaggaaaaactacaatttga 18751341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 298
Target Start/End: Original strand, 24878410 - 24878539
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    |||||||||||||| | ||||||  | || ||  |||||||  ||||||||||||| | ||||||||||| ||||||||| | |||| | || ||||  |    
T  24878410 aagtgctcaaaagtgatatatttcttatgttagtttaggcattttagtgacttgttctacaagttatctatggaaaagctccaatttta-tgcatttaca 24878508  T
Q  268 ccatttatgctttacatgcctgattctaccc 298  Q
    |||||||||||| | |||||| | |||||||    
T  24878509 ccatttatgcttcatatgccttactctaccc 24878539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 168 - 299
Target Start/End: Complemental strand, 354508 - 354377
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  354508 aagtgctcaaaagtaacatatttcatgtgttaacttagacaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatatta 354409  T
Q  268 ccatttatgctttacatgcctgattctaccca 299  Q
    ||||||||||||||||||||||||||||||||    
T  354408 ccatttatgctttacatgcctgattctaccca 354377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1494 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: scaffold1494
Description:

Target: scaffold1494; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 954 - 1089
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 262  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |     
T  954 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttt-gcaagttatctaaggaaaagctaccatttgagtgcaa 1052  T
Q  263 ttttaccatttatgctttacatgcctgattctaccca 299  Q
    |||||||||||||||||||||||||||||||||||||    
T  1053 ttttaccatttatgctttacatgcctgattctaccca 1089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 117404 - 117268
Alignment:
Q  163 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 262  Q
    |||| ||||||||||||||||||||||| ||||| |||  ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  117404 ttgataagtgctcaaaagtaacatatttcatgtgttaatctaggcaatttagtgacttgttttgaaagttatctaaggaaaagctaccatttgagtgtgt 117305  T
Q  263 ttttaccatttatgctttacatgcctgattctaccca 299  Q
    || |||||||||||||||||||| |||||||||||||    
T  117304 ttataccatttatgctttacatgtctgattctaccca 117268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 168 - 299
Target Start/End: Complemental strand, 17241 - 17110
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||||||||| |||| |||||   |||||||||||||||||||||||||||||||||||| || |  ||| ||||||| ||    
T  17241 aagtgctcaaaagtaacatattttatgtgttaacctaggcttgttagtgacttgttttgcaagttatctaaggaaaagccactaagtgattgtatttgta 17142  T
Q  268 ccatttatgctttacatgcctgattctaccca 299  Q
    ||||||||||||||| ||| ||||||||||||    
T  17141 ccatttatgctttacgtgcttgattctaccca 17110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 168 - 254
Target Start/End: Complemental strand, 80008 - 79922
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccattt 254  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  80008 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccattt 79922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0744 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 168 - 292
Target Start/End: Original strand, 1851 - 1974
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    ||||||||||||||||||||||||||||| ||| |||||||  ||||| ||||||| |||||||||||||||||||||||||||  |  ||||  |||||    
T  1851 aagtgctcaaaagtaacatattttatgtgttaatttaggcattttagttacttgttctgcaagttatctaaggaaaagctaccaaat-tgtgttctttta 1949  T
Q  268 ccatttatgctttacatgcctgatt 292  Q
    |||||||||||||||||||||||||    
T  1950 ccatttatgctttacatgcctgatt 1974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0458 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 168 - 296
Target Start/End: Complemental strand, 10324 - 10197
Alignment:
Q  168 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 267  Q
    |||||||||||||||| |||| ||||||| ||| ||||| |  |||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||     
T  10324 aagtgctcaaaagtaatatatgttatgtgttaatttaggtattttagtgacttgttttgcaagttatctaaggaaaaactaccatttg-ttgtaattttg 10226  T
Q  268 ccatttatgctttacatgcctgattctac 296  Q
    ||||||||||||||  ||||| |||||||    
T  10225 ccatttatgctttatgtgccttattctac 10197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0871 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0871
Description:

Target: scaffold0871; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 245
Target Start/End: Original strand, 4325 - 4408
Alignment:
Q  162 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaag 245  Q
    ||||| |||||||||||||| | | |||| ||||| || ||||||||  |||||||||  |||| ||||||||||| |||||||    
T  4325 cttgataagtgctcaaaagtgatagatttcatgtgttagcttaggcattttagtgactgattttacaagttatctatggaaaag 4408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University