View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_186 (Length: 297)
Name: NF9264A_low_186
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_186 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 6 - 293
Target Start/End: Complemental strand, 37384685 - 37384398
Alignment:
| Q |
6 |
gaagaatattaatgaatttgaaatctggatttcagtcagttataccattgtggaagcaattggagtactataaagaataccnnnnnnngctaggtgccta |
105 |
Q |
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| T |
37384685 |
gaagaatattaatgaatttgaaatctggatttcagtcagttataccattgtggaagcaattggagtactataaagaataccaaaaaaagctaggtgccta |
37384586 |
T |
|
| Q |
106 |
tcttggagnnnnnnnggcaaaagagacaattacaaaagcattgtacataataagtctaggaacaaacgactttctagagaattattatacaattcctggc |
205 |
Q |
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| T |
37384585 |
tcttggagaaaaaaaggcaaaagagacaattacaaaagcattgtacataataagtctaggaacaaacgactttctagagaattattatacaattcctggc |
37384486 |
T |
|
| Q |
206 |
agggcatctcaatacacacctagtgagtatcaaaattttcttgctggaatagctcaaaatttcatccacaaactttatgatcttggtg |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37384485 |
agggcatctcaatacacacctagtgagtatcaaaattttcttgctggaatagctcaaaatttcatccacaaactttatgatcttggtg |
37384398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 270
Target Start/End: Original strand, 36600506 - 36600612
Alignment:
| Q |
164 |
ggaacaaacgactttctagagaattattatacaattcctggcagggcatctcaatacacacctagtgagtatcaaaattttcttgctggaatagctcaaa |
263 |
Q |
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||||||||||| || ||||||||||| ||||| || || || |||||||| |||||||||||| |||| |||| ||||||||||||||||||| | | |
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| T |
36600506 |
ggaacaaacgatttcctagagaattactataccatgccaggaagggcatcacaatacacacctcaacagtaccaaacttttcttgctggaatagctgaga |
36600605 |
T |
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| Q |
264 |
atttcat |
270 |
Q |
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| T |
36600606 |
atttcat |
36600612 |
T |
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