View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_187 (Length: 297)
Name: NF9264A_low_187
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_187 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 164 - 291
Target Start/End: Original strand, 6262476 - 6262603
Alignment:
| Q |
164 |
aggtatacataaatttgtcttagttgtgtaaagaagcttgaaaaatcataatcaaaattacagaacaatgcattattttctattcctctcactgaacttt |
263 |
Q |
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| T |
6262476 |
aggtatacataaatttgtcttaattgtgtaaagaagcttgaaaaatcataatcaaaattacagaacaatgcattattttctattcctctcactgaacttt |
6262575 |
T |
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| Q |
264 |
tacatagttccttgaaattcttccattt |
291 |
Q |
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| T |
6262576 |
tacatagttccttgaaattcttccattt |
6262603 |
T |
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Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 6261216 - 6261361
Alignment:
| Q |
1 |
tttgctatagaaaactgatgaagacataaagaggttctattttttgttgaattacggtaggtgtatttacaaatataccactttgctttatattgtttat |
100 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
6261216 |
tttgctatagaaaactgatgaagacaaaaag--gttctattttttgttgaattatggtaggtgtatttgcaaatataccactttgctatatattgtttat |
6261313 |
T |
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| Q |
101 |
cagtcacgcatcttagaagagaggtgaggaactttaagtgtaactaag |
148 |
Q |
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| T |
6261314 |
cagtcacacatcgtagaagagaggtgaggaactttaagtgtaactaag |
6261361 |
T |
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