View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_188 (Length: 297)
Name: NF9264A_low_188
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_188 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 43850703 - 43850978
Alignment:
| Q |
16 |
tggacatcattaggttgattggaaacatcggttaattccagcacgtgactctgcaaacattctttgctgctccgataatgcttgttcttctgtcatctca |
115 |
Q |
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| T |
43850703 |
tggacatcattaggttgattggaaacatcggttaattccagcaggtgactctacaaacattctttgctgctccgataatgcttgttcttctgtcatctca |
43850802 |
T |
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| Q |
116 |
gttgcacagctccacttggctccttttatagtgtcctgctgcaaggtaacaaatatatcagaaaatggttttgctccaaagccaatccataaacgttaga |
215 |
Q |
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| T |
43850803 |
gttgcacagctccacttggctccttttatagtgtcctgctgcaaggtaacaaatatatcagaaaatggttttgctccaaagccaatccataaacgttaga |
43850902 |
T |
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| Q |
216 |
ataataaaatctagaccctgtgtgcatgcgcgcgcatgcccatcactctctaatttcaactcacaaaccacataac |
291 |
Q |
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| T |
43850903 |
ataataaaatctagaccctgtgtgcatgcgcgcgcatgcccatcactctttaatttcaaatcacaaaccacataac |
43850978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 50 - 181
Target Start/End: Original strand, 24012369 - 24012500
Alignment:
| Q |
50 |
attccagcacgtgactctgcaaacattctttgctgctccgataatgcttgttcttctgtcatctcagttgcacagctccacttggctccttttatagtgt |
149 |
Q |
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| T |
24012369 |
attctagcacgtgcctctgcaaacatcctttgctgctctgctaatgcttgttcctcggtcatctcagctgcgccactccacttggcaccttttatagagt |
24012468 |
T |
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| Q |
150 |
cctgctgcaaggtaacaaatatatcagaaaat |
181 |
Q |
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| T |
24012469 |
cttgctgcaaggcaacaaatacatcagaaaat |
24012500 |
T |
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