View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_194 (Length: 294)

Name: NF9264A_low_194
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_194
NF9264A_low_194
[»] chr1 (4 HSPs)
chr1 (8-163)||(4877259-4877429)
chr1 (8-163)||(4872957-4873129)
chr1 (8-118)||(30189939-30190049)
chr1 (112-163)||(30189876-30189928)
[»] chr8 (4 HSPs)
chr8 (8-163)||(3058315-3058487)
chr8 (8-163)||(3062616-3062788)
chr8 (10-163)||(26082911-26083081)
chr8 (112-160)||(26065168-26065216)
[»] chr6 (1 HSPs)
chr6 (8-163)||(6667972-6668144)
[»] chr4 (2 HSPs)
chr4 (8-163)||(17439412-17439584)
chr4 (8-163)||(17443714-17443886)
[»] chr3 (2 HSPs)
chr3 (53-116)||(28010300-28010363)
chr3 (135-163)||(28013761-28013789)


Alignment Details
Target: chr1 (Bit Score: 121; Significance: 5e-62; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 4877429 - 4877259
Alignment:
Q  8 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4877429 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 4877330  T
Q  108 acattaa---------------aatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 163  Q
    |||||||               |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4877329 acattaaaataaaagaaaacaaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 4877259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 4873129 - 4872957
Alignment:
Q  8 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4873129 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 4873030  T
Q  108 acattaa-----------------aatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 163  Q
    |||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4873029 acattaaaataaaagaaaaaataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 4872957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 30190049 - 30189939
Alignment:
Q  8 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30190049 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttttgcagaggtaacttcaactact 30189950  T
Q  108 acattaaaata 118  Q
    |||||||||||    
T  30189949 acattaaaata 30189939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 30189928 - 30189876
Alignment:
Q  112 taaaatatcacaaaa-tactattgtgtacatctgaaatctcaatgtctcaaca 163  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  30189928 taaaatatcacaaaaatactattgtgtacatctgaaagctcaatgtctcaaca 30189876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 3058487 - 3058315
Alignment:
Q  8 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3058487 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 3058388  T
Q  108 acattaa-----------------aatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 163  Q
    |||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3058387 acattaaaataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 3058315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 3062788 - 3062616
Alignment:
Q  8 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3062788 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 3062689  T
Q  108 acattaa-----------------aatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 163  Q
    |||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3062688 acattaaaataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 3062616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 163
Target Start/End: Original strand, 26082911 - 26083081
Alignment:
Q  10 gacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26082911 gacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactac 26083010  T
Q  110 at-----------------taaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 163  Q
    ||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26083011 attaaaataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 26083081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 26065168 - 26065216
Alignment:
Q  112 taaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctca 160  Q
    |||||||||||||||||||||||| |  |||||||||||||||||||||    
T  26065168 taaaatatcacaaaatactattgtattaatctgaaatctcaatgtctca 26065216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 6667972 - 6668144
Alignment:
Q  8 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6667972 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 6668071  T
Q  108 acat-----------------taaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 163  Q
    ||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6668072 acattaaaataaaagaaaaaataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 6668144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 17439412 - 17439584
Alignment:
Q  8 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17439412 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 17439511  T
Q  108 acat-----------------taaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 163  Q
    ||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17439512 acattaaaataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 17439584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 17443714 - 17443886
Alignment:
Q  8 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17443714 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 17443813  T
Q  108 acat-----------------taaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 163  Q
    ||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17443814 acattaaaataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 17443886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 28010300 - 28010363
Alignment:
Q  53 aaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaaa 116  Q
    |||||||  ||||||||||||||||||||||| |||||||||||||||||| |||| |||||||    
T  28010300 aaacacttcaacaagtatgggtcaccatacttatgcagaggtaacttcaacaactatattaaaa 28010363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 163
Target Start/End: Original strand, 28013761 - 28013789
Alignment:
Q  135 tgtacatctgaaatctcaatgtctcaaca 163  Q
    |||||||||||||||||||||||||||||    
T  28013761 tgtacatctgaaatctcaatgtctcaaca 28013789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University