View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_2 (Length: 609)
Name: NF9264A_low_2
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 428; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 25 - 501
Target Start/End: Complemental strand, 1890950 - 1890474
Alignment:
| Q |
25 |
atgaacctgacaaatttaccgtcaatctaaacatgtactaagttgttatatacatatgttgttctaacaccgtgattctgacaaacttaccttcttctnn |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1890950 |
atgaacctgacaaatttaccgtcaatctaaacatgtactaagttgttgtatacatatgttgttctaacaccgtgattctgacaaacttaccttcttctaa |
1890851 |
T |
|
| Q |
125 |
nnnnngtgataggaaggagaatagcagtaccaatagcataagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagt |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1890850 |
aaaaagtgataggaaggagaatagcagtaccaatagcataagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagt |
1890751 |
T |
|
| Q |
225 |
gagtaaagccatttcaatagtttcctgtcctatgatcaccacaggtggcaaaacatccttgtaaaatgaccatcttcttgtcatattttctctgacgtct |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||| |
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| T |
1890750 |
gagtaaagccatttcaatagtttcctgtcctatgatcaccacaggtggcaaaacatccttgtaaaaggaccatcttcttctcatattttctctgacttct |
1890651 |
T |
|
| Q |
325 |
aagttctatcagttacacaacaatcacaaattctgctgaatttcagaatttctgtgagatgtttatcatgatgaggtttggaccataaactgaaatgaaa |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1890650 |
aagttctatcagttacacaacaatcacaaattctgctgaagttcagaatttctatgagatgtttttcatgatgaggtttggaccataaactgaaatgaaa |
1890551 |
T |
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| Q |
425 |
gataaaagttggttggttgtattaaaagttggtatattatttaagaaactgtttatatactcccattgtactttgct |
501 |
Q |
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| T |
1890550 |
gataaaagttggttggttgtattaaaagttggtatattatttaagaaactgtttatatactcccattgtactttgct |
1890474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 130 - 308
Target Start/End: Complemental strand, 1895695 - 1895517
Alignment:
| Q |
130 |
gtgataggaaggagaatagcagtaccaatagcataagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagta |
229 |
Q |
| |
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|||| |||||| |||| || |||||||| |||||||| ||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1895695 |
gtgacaggaagaagaacagaagtaccaacagcataagaataagcaacaaagacatggttgttcatcccttgatttgtggctgctttgaacaaagtgagta |
1895596 |
T |
|
| Q |
230 |
aagccatttcaatagtttcctgtcctatgatcaccacaggtggcaaaacatccttgtaaaatgaccatcttcttgtcat |
308 |
Q |
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| T |
1895595 |
aagccatttcaatagtttcctgtcctatgatcactaaaattggcaaaacatccatgtaaaaggaccatcttcttgtcat |
1895517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 86 - 308
Target Start/End: Complemental strand, 1884245 - 1884023
Alignment:
| Q |
86 |
ttctaacaccgtgattctgacaaacttaccttcttctnnnnnnngtgataggaaggagaatagcagtaccaatagcataagcataggcaacaaagacatg |
185 |
Q |
| |
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||||||| |||||||||| ||||||||||||||||| |||||||||||||||| || ||| ||| ||||||||||||||||||||||||||| |
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| T |
1884245 |
ttctaacgtcgtgattctgtcaaacttaccttcttctaaaaaaagtgataggaaggagaaaagaagttgcaacagcataagcataggcaacaaagacatg |
1884146 |
T |
|
| Q |
186 |
attgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcaccacaggtggcaaaacatccttg |
285 |
Q |
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||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| | ||| | ||||| ||||| |||||||||| || |||| || |
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| T |
1884145 |
attgttcatcccttgaagtgtagctgctttgaacaaagtcagtaaagccatgtcaacacattcattgcctataatcacaacaggtggcagaaaatccatg |
1884046 |
T |
|
| Q |
286 |
taaaatgaccatcttcttgtcat |
308 |
Q |
| |
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||||| |||| | |||||||||| |
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| T |
1884045 |
taaaaggaccgttttcttgtcat |
1884023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 150 - 354
Target Start/End: Complemental strand, 1911131 - 1910928
Alignment:
| Q |
150 |
agtaccaatagcataagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcc |
249 |
Q |
| |
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|||||||| |||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| |
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| T |
1911131 |
agtaccaacagcataagcataagcaataaagacatgattgttcatcccttgaagtgtagctgctttgaacaaagtgagtaaagccatgtcaatacattca |
1911032 |
T |
|
| Q |
250 |
tgtcctatgatcaccacaggtggcaaaacatccttgtaaaatgaccatcttcttgtcatattttctctgacgtctaagttctatcagttacacaacaatc |
349 |
Q |
| |
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| | ||| ||||| ||||||||| ||||||| |||| || ||||||||||||||||| ||||| | || |||| ||||| ||||||||||||||||| |
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| T |
1911031 |
tagcatataatcacagcaggtggcagaacatccatgtacaaggaccatcttcttgtcat-gtttctgtcacttctatgttctttcagttacacaacaatc |
1910933 |
T |
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| Q |
350 |
acaaa |
354 |
Q |
| |
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||||| |
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| T |
1910932 |
acaaa |
1910928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 153 - 308
Target Start/End: Complemental strand, 1902083 - 1901928
Alignment:
| Q |
153 |
accaatagcataagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgt |
252 |
Q |
| |
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||||| |||||||||||| |||| ||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| ||| | ||| | |
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| T |
1902083 |
accaacagcataagcataagcaataaagacatggttgttcatcccttgaagtgttacagctttgaacaaagtgagtaaagccatgtcagaacattcattg |
1901984 |
T |
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| Q |
253 |
cctatgatcaccacaggtggcaaaacatccttgtaaaatgaccatcttcttgtcat |
308 |
Q |
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||||| |||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
1901983 |
cctataatcaccacaggtggcaaaacatccatgtaaagtgaccatcttcttgtcat |
1901928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 130 - 235
Target Start/End: Complemental strand, 1878189 - 1878084
Alignment:
| Q |
130 |
gtgataggaaggagaatagcagtaccaatagcataagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagta |
229 |
Q |
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|||||||||||||||| || |||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| | ||| ||| || |
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| T |
1878189 |
gtgataggaaggagaacagaagtaccaacagcataagcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgacta |
1878090 |
T |
|
| Q |
230 |
aagcca |
235 |
Q |
| |
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|||||| |
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|
| T |
1878089 |
aagcca |
1878084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 11537577 - 11537528
Alignment:
| Q |
187 |
ttgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccat |
236 |
Q |
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|||||||||||||| |||| |||||||||||||||||||| ||| |||| |
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| T |
11537577 |
ttgttcatcccttgcagtggtgctgctttgaacaaagtgagcaaacccat |
11537528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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