View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_206 (Length: 288)
Name: NF9264A_low_206
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_206 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 51 - 288
Target Start/End: Original strand, 3551596 - 3551833
Alignment:
| Q |
51 |
accaattgagctcactcaagaagatgatcaacaagtaccttcagatcctctagaatcacaaaatgataccaattcaaatgcttattcatatcctttagat |
150 |
Q |
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| T |
3551596 |
accaattgagctcactcaagaagaagatcatcaagtaccttcagatcctctagaatcacaaaatgataccaattcaaatgcttattcatatcctttagat |
3551695 |
T |
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| Q |
151 |
aatgatattggtgatttgaggaggatggattggacatttgatgatatgtttgaggacatgaatggagttgctaatggctctgatttttatgggctgcaaa |
250 |
Q |
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| T |
3551696 |
aatgatattggtgatttgaggaggatggattggacatttgatgatatgtttgaggacatgaatggagttgctaatggctctgatttttatgggctgcaaa |
3551795 |
T |
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| Q |
251 |
atatgcaatactcaactccaccctttgaagagaataat |
288 |
Q |
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| T |
3551796 |
atatgcaatactcaactccaccctttgaagaggataat |
3551833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 50 - 288
Target Start/End: Original strand, 3562763 - 3562992
Alignment:
| Q |
50 |
taccaattgagctcactcaagaagatgatcaacaagtaccttcagatcctctagaatcacaaaatgataccaattcaaatgcttattcatatcctttaga |
149 |
Q |
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| T |
3562763 |
taccaattgagcttactcaagaagaagatcaacaagtaccttcaga---------atcacaaaatgatgccaattccaattcttattcatatcctctaga |
3562853 |
T |
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| Q |
150 |
taatgatattggtgatttgaggaggatggattggacatttgatgatatgtttgaggacatgaatggagttgctaatggctctgatttttatgggctgcaa |
249 |
Q |
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| T |
3562854 |
taatgatattggtgatttgagaaggatggattggagatttgaggatatgtttgatgacatgaatagggttgctaattgctctaatttttatgggctacaa |
3562953 |
T |
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| Q |
250 |
aatatgcaatactcaactccaccctttgaagagaataat |
288 |
Q |
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| T |
3562954 |
aatatgcaatattcaactcaactttttgaagaggataat |
3562992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 110 - 288
Target Start/End: Original strand, 3574220 - 3574386
Alignment:
| Q |
110 |
aaaatgataccaattcaaatgcttattcatatcctttagataatgatattggtgatttgaggaggatggattggacatttgatgatatgtttgaggacat |
209 |
Q |
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| T |
3574220 |
aaaatgataccaattcaaatgcttattcatatcctctagataatgatattggtgatttgaggacaatggattggaca------------tttgaggatat |
3574307 |
T |
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| Q |
210 |
gaatggagttgctaatggctctgatttttatgggctgcaaaatatgcaatactcaactccaccctttgaagagaataat |
288 |
Q |
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| T |
3574308 |
gaatggggttgttaatgactctgatttttatgggctacaaaatatgcaatgctcaactcaactttttgaagaggataat |
3574386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 3589274 - 3589347
Alignment:
| Q |
22 |
gttgctgctaagtttgcaaatgagtcactaccaattgagctcactcaagaagatgatcaacaagtaccttcaga |
95 |
Q |
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| T |
3589274 |
gttgctgctaagtttgcaaatgagtcaccaccaattgagctcactcacgaagatgatcaacaagtaccttcaga |
3589347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 266
Target Start/End: Original strand, 3589433 - 3589533
Alignment:
| Q |
166 |
ttgaggaggatggattggacatttgatgatatgtttgaggacatgaatggagttgctaatggctctgatttttatgggctgcaaaatatgcaatactcaa |
265 |
Q |
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| T |
3589433 |
ttgaggagaatggattggaaatttgaggatatgtttgatgacttgaatggggttgctaattgctctaatttgtatgggcaagaaaatatgcaatactcaa |
3589532 |
T |
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| Q |
266 |
c |
266 |
Q |
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| T |
3589533 |
c |
3589533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 3573971 - 3574038
Alignment:
| Q |
20 |
aagttgctgctaagtttgcaaatgagtcactaccaattgagctcactcaagaagatgatcaacaagta |
87 |
Q |
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| T |
3573971 |
aagttgctgctaagtatgcaaatgagtcaccaccaattgagctcactcaagaacaagatcatcaagta |
3574038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 3574135 - 3574194
Alignment:
| Q |
166 |
ttgaggaggatggattggacatttgatgatatgtttgaggacatgaatggagttgctaat |
225 |
Q |
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| T |
3574135 |
ttgaggatgatggattggacatttaaggatatgtttgttgagatgaatggggttgctaat |
3574194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 10025411 - 10025486
Alignment:
| Q |
20 |
aagttgctgctaagtttgcaaatgagtcactaccaattgagctcactcaagaagatgatcaacaagtaccttcaga |
95 |
Q |
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| T |
10025411 |
aagttgctgctaagtttgcaaatgagtcaccaccaattgagctcactcatgaagaagatcatcaagtatcttcaga |
10025486 |
T |
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