View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_215 (Length: 283)

Name: NF9264A_low_215
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_215
NF9264A_low_215
[»] chr1 (4 HSPs)
chr1 (20-282)||(33810741-33811003)
chr1 (20-282)||(33870210-33870472)
chr1 (21-172)||(33830917-33831068)
chr1 (21-172)||(33893080-33893231)
[»] chr2 (4 HSPs)
chr2 (23-178)||(24408805-24408960)
chr2 (21-109)||(24410123-24410211)
chr2 (136-178)||(24410634-24410676)
chr2 (199-230)||(24408777-24408808)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 282
Target Start/End: Original strand, 33810741 - 33811003
Alignment:
Q  20 tagaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagaccc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33810741 tagaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagaccc 33810840  T
Q  120 ttggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcacaagagcctgtgggtcagcagggacaacgctaccatctcgagcc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33810841 ttggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcacaagagcctgtgggtcagcagggacaacgctaccatctcgagcc 33810940  T
Q  220 atccctttactctatacctccaaccacttcaaatcacataccaaaaccaaactccaaactcga 282  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33810941 atccctttaccctatacctccaaccacttcaaatcacataccaaaaccaaactccaaactcga 33811003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 282
Target Start/End: Original strand, 33870210 - 33870472
Alignment:
Q  20 tagaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagaccc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33870210 tagaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagaccc 33870309  T
Q  120 ttggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcacaagagcctgtgggtcagcagggacaacgctaccatctcgagcc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33870310 ttggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcacaagagcctgtgggtcagcagggacaacgctaccatctcgagcc 33870409  T
Q  220 atccctttactctatacctccaaccacttcaaatcacataccaaaaccaaactccaaactcga 282  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33870410 atccctttaccctatacctccaaccacttcaaatcacataccaaaaccaaactccaaactcga 33870472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 33830917 - 33831068
Alignment:
Q  21 agaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagaccct 120  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||| | |   |||||    
T  33830917 agaggggtaagagggcaaaggatcaaggattctaagatcacgtgcatcaatatgaaccctattcatgataacatacttgtccacatcatgaatccaccct 33831016  T
Q  121 tggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttct 172  Q
    ||||| ||| |||||||   |||||| ||| |||||||||||||||||||||    
T  33831017 tggcctgtagcatcaaactgaatccaacttgtagaagactgtgtcttcttct 33831068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 33893080 - 33893231
Alignment:
Q  21 agaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagaccct 120  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||| | |   |||||    
T  33893080 agaggggtaagagggcaaaggatcaaggattctaagatcacgtgcatcaatatgaaccctattcatgataacatacttgtccacatcatgaatccaccct 33893179  T
Q  121 tggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttct 172  Q
    ||||| ||| |||||||   |||||| ||| |||||||||||||||||||||    
T  33893180 tggcctgtagcatcaaactgaatccaacttgtagaagactgtgtcttcttct 33893231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 23 - 178
Target Start/End: Complemental strand, 24408960 - 24408805
Alignment:
Q  23 aggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagacccttg 122  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    |||||  ||    
T  24408960 aggggtaagagagcaagggatcaaggattctaagatcatgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaatttgagaccagtg 24408861  T
Q  123 gccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcacaa 178  Q
    |||| ||| ||| |||||||||||||||| | ||||||||||||||||||||||||    
T  24408860 gccattactatccaaagcaatccagcttccaaaagactgtgtcttcttcttcacaa 24408805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 24410123 - 24410211
Alignment:
Q  21 agaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24410123 agaggggtaagagagcaagggatcaaggattctaagatcacatgcattaatctgaaccctatgcatgatagcatacttgtccacatcaa 24410211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 178
Target Start/End: Original strand, 24410634 - 24410676
Alignment:
Q  136 aaagcaatccagcttctagaagactgtgtcttcttcttcacaa 178  Q
    |||||||||||||||| | ||||||||||||||||||||||||    
T  24410634 aaagcaatccagcttccaaaagactgtgtcttcttcttcacaa 24410676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 230
Target Start/End: Complemental strand, 24408808 - 24408777
Alignment:
Q  199 acaacgctaccatctcgagccatccctttact 230  Q
    ||||||||||||||||||||||||||||||||    
T  24408808 acaacgctaccatctcgagccatccctttact 24408777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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