View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_219 (Length: 282)

Name: NF9264A_low_219
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_219
NF9264A_low_219
[»] chr6 (2 HSPs)
chr6 (1-266)||(18459817-18460085)
chr6 (161-253)||(24133346-24133435)
[»] chr8 (5 HSPs)
chr8 (92-260)||(23710677-23710842)
chr8 (98-252)||(754008-754159)
chr8 (148-262)||(9173918-9174029)
chr8 (109-260)||(14822468-14822616)
chr8 (155-260)||(9710464-9710565)
[»] chr3 (5 HSPs)
chr3 (12-260)||(6162112-6162358)
chr3 (57-260)||(52972554-52972755)
chr3 (147-260)||(54586327-54586437)
chr3 (210-248)||(35309906-35309944)
chr3 (1-66)||(54586518-54586584)
[»] chr1 (6 HSPs)
chr1 (56-260)||(50515259-50515460)
chr1 (147-260)||(44713298-44713408)
chr1 (57-260)||(45910520-45910720)
chr1 (210-266)||(6851381-6851438)
chr1 (210-253)||(16768021-16768064)
chr1 (216-253)||(10548342-10548379)
[»] chr2 (5 HSPs)
chr2 (56-260)||(38619172-38619373)
chr2 (6-262)||(17312586-17312839)
chr2 (1-252)||(9635368-9635617)
chr2 (210-253)||(19991633-19991676)
chr2 (210-253)||(26262696-26262739)
[»] chr7 (3 HSPs)
chr7 (6-260)||(41257417-41257668)
chr7 (94-260)||(19215456-19215619)
chr7 (218-266)||(10348728-10348777)
[»] chr5 (5 HSPs)
chr5 (1-266)||(38965566-38965829)
chr5 (57-266)||(13850826-13851034)
chr5 (94-260)||(20236322-20236484)
chr5 (155-266)||(23352198-23352307)
chr5 (6-260)||(25761165-25761416)


Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 18459817 - 18460085
Alignment:
Q  1 tcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtcaaaa-atgaacacagtttctacactggttttgtccaaaattcgaa 99  Q
    |||||||||||||||| |||||||||| |||||||||  |||||||||||||||||||| ||||||||||||||| |||||||| | ||| |||||| ||    
T  18459817 tcatgtggggcatcaacaggaacaaccatgactgaaagcagtgcgaagcagagtcaaaagatgaacacagtttctgcactggttctatccgaaattcaaa 18459916  T
Q  100 atccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgcc-nnnnnnncgaatgg 198  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||        | |||||    
T  18459917 atccggaacgcatgaatgcagtccggatttgaaattccagaacgtttcagtacagatcatatgacgtgatcaaaaggaaatcgccaaaaaaaacaaatgg 18460016  T
Q  199 gggaaggtttattatatacacattacctttgcattcagacgaaaatgatgatgttcacc-cccttgatg 266  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||    
T  18460017 gggaaggtttattatatacacattacctttgcattcagtcgaaaatgatgatgttaacctcccttgatg 18460085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 253
Target Start/End: Original strand, 24133346 - 24133435
Alignment:
Q  161 tgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacacattacctttgcattcagacgaaaatgatgatgtt 253  Q
    |||| |||||||||||||| ||||       |||||| ||||||||||||   |||||||||||||||| |||||| ||||||||||||||||    
T  24133346 tgacatgatcaaaaggaaagcgcctagaaatcgaatgagggaaggtttat---atacacattacctttgaattcagtcgaaaatgatgatgtt 24133435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 92 - 260
Target Start/End: Original strand, 23710677 - 23710842
Alignment:
Q  92 aattcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnn 191  Q
    |||||||||||||||||||||||||||||| || |||| | ||||  ||||||| ||||| | ||||||||||||||||||||||||||||||           
T  23710677 aattcgaaatccggaacgcatgaatgcagtccgaatttcatattctggaacgttacagtacatatcatatgacgtgatcaaaaggaaatcgcctaaaaaa 23710776  T
Q  192 cgaatgggggaaggtttattatatacacattacctttgcattcagacgaaaatgatgatgttcaccccc 260  Q
    |||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23710777 cgaatgggggaaggt---ttatatacacattacctttgcattcagacgaaaatgatgatgttaaccccc 23710842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 252
Target Start/End: Complemental strand, 754159 - 754008
Alignment:
Q  98 aaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatg 197  Q
    ||||| |||||||||||||||||| ||||||| | ||||  ||||| | ||||| ||||||||||| ||||||||||||||||||||       ||||||    
T  754159 aaatctggaacgcatgaatgcagtccggatttcatattctggaacggtacagtacagatcatatgaagtgatcaaaaggaaatcgcctaaaaaacgaatg 754060  T
Q  198 ggggaaggtttattatatacacattacctttgcattcagacgaaaatgatgatgt 252  Q
    |||||||||   |||||||||||||| |||||||||||| | |||||||||||||    
T  754059 ggggaaggt---ttatatacacattatctttgcattcagtcaaaaatgatgatgt 754008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 148 - 262
Target Start/End: Original strand, 9173918 - 9174029
Alignment:
Q  148 agtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacacattacctttgcattcagacgaaaatgat 247  Q
    |||| ||||||||||||||||||||||| ||||| ||       |||||||||||||||||||   ||||||||||||||||||||||| | ||||||||    
T  9173918 agtacagatcatatgacgtgatcaaaagaaaatctcctaaaaaacgaatgggggaaggtttat---atacacattacctttgcattcagtcaaaaatgat 9174014  T
Q  248 gatgttcaccccctt 262  Q
    |||||| ||||||||    
T  9174015 gatgttaaccccctt 9174029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 260
Target Start/End: Complemental strand, 14822616 - 14822468
Alignment:
Q  109 gcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggttt 208  Q
    ||||||||||||| ||||||| |  |||| ||| ||| |||||  |||||||||| ||||| |||||||||||||        |||||||||||||||||    
T  14822616 gcatgaatgcagtccggatttaattttccggaatgttccagtacggatcatatgatgtgattaaaaggaaatcgcttaaaattcgaatgggggaaggttt 14822517  T
Q  209 attatatacacattacctttgcattcagacgaaaatgatgatgttcaccccc 260  Q
    ||   ||||||||||||||| |||| |||| |||||||||||||| ||||||    
T  14822516 at---atacacattacctttacatttagacaaaaatgatgatgttaaccccc 14822468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 260
Target Start/End: Original strand, 9710464 - 9710565
Alignment:
Q  155 atcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacacattacctttgcattcagacgaaaatgatgatgttc 254  Q
    |||||||||| |||||||||| |||| |||        |||||||||||||||    ||||||||||||||||||||||||| ||||||||||||||||     
T  9710464 atcatatgacatgatcaaaagaaaattgcctaaaaaatgaatgggggaaggtt----atatacacattacctttgcattcagtcgaaaatgatgatgtta 9710559  T
Q  255 accccc 260  Q
    ||||||    
T  9710560 accccc 9710565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 6162112 - 6162358
Alignment:
Q  12 atcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaacgc 110  Q
    ||||| |||||||||| |||||||||| ||||||||| ||||||| |||||||||||||||||| |||||||  | |||  ||| |||||||| ||||||    
T  6162112 atcaacaggaacaaccatgactgaaaacagtgcgaagtagagtcagaaaatgaacacagtttctgcactggtgctctccggaatccgaaatccagaacgc 6162211  T
Q  111 atgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttat 210  Q
    ||||||||||  ||||||| | ||||| ||||  | || |  | ||||||  |||||||||||||  |||||||       ||| | ||| |||||   |    
T  6162212 atgaatgcagaccggatttaacattccggaacagtacaatgaatatcatacaacgtgatcaaaagttaatcgcctaaaaatcgactagggaaaggt---t 6162308  T
Q  211 tatatacacattacctttgcattcagacgaaaatgatgatgttcaccccc 260  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6162309 tatatacacattacctttgcattcagacgaaaatgatgatgttaaccccc 6162358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 57 - 260
Target Start/End: Original strand, 52972554 - 52972755
Alignment:
Q  57 aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttc-agtataga 155  Q
    ||||||||||||||||||  | ||||   ||||| | ||| ||||||||||||||||||| |||| | ||||| | | ||| |||| | |  |||| | |    
T  52972554 aaaatgaacacagtttctgtattggtgcagtccagatttcaaaatccggaacgcatgaatccagtccagattttacagtcc-gaacatgtagagtacaaa 52972652  T
Q  156 tcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaat-gggggaaggtttattatatacacattacctttgcattcagacgaaaatgatgatgttc 254  Q
    ||||||||||||||||||| |||||||||       ||||| ||||||||||   ||||| ||||||||||||||||||||| ||||||||||||||||     
T  52972653 tcatatgacgtgatcaaaaagaaatcgcctaaaaaacgaatggggggaaggt---ttatacacacattacctttgcattcagtcgaaaatgatgatgtta 52972749  T
Q  255 accccc 260  Q
    ||||||    
T  52972750 accccc 52972755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 147 - 260
Target Start/End: Complemental strand, 54586437 - 54586327
Alignment:
Q  147 cagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacacattacctttgcattcagacgaaaatga 246  Q
    ||||| ||||| |||||||||||||||||||||| |||       |||||||| |||  |||||   ||||||| |||||||||||||||||||||||||    
T  54586437 cagtacagatcgtatgacgtgatcaaaaggaaattgcctaaaaaacgaatgggagaaattttat---atacacactacctttgcattcagacgaaaatga 54586341  T
Q  247 tgatgttcaccccc 260  Q
    ||||||| ||||||    
T  54586340 tgatgttaaccccc 54586327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 35309906 - 35309944
Alignment:
Q  210 ttatatacacattacctttgcattcagacgaaaatgatg 248  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  35309906 ttatataaacattacctttgcattcagacaaaaatgatg 35309944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 54586584 - 54586518
Alignment:
Q  1 tcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaaca 66  Q
    |||| |||||||||||  ||||||||| | |||||||| | ||||||||||||||| ||||||||||    
T  54586584 tcatttggggcatcaaccggaacaaccataactgaaaacaatgcgaagcagagtcagaaaatgaaca 54586518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 260
Target Start/End: Complemental strand, 50515460 - 50515259
Alignment:
Q  56 aaaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtataga 155  Q
    ||||||||||||||||| |  |||||| | ||||  | |||||| ||||||| |||||||| |||| ||||||  | | ||| ||| | | ||||| |||    
T  50515460 aaaaatgaacacagtttttgtactggtgtagtccggatttcgaattccggaaagcatgaatccagtccggattgcatagtccggaaaggtacagtacaga 50515361  T
Q  156 tcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacacattacctttgcattcagacgaaaatgatgatgttca 255  Q
    |||||||||||||||||||||||||||||       | ||||||| |||||   ||||||||||||||||||||||||||| |||||||||||||||| |    
T  50515360 tcatatgacgtgatcaaaaggaaatcgcctaaaaaacaaatggggaaaggt---ttatatacacattacctttgcattcagtcgaaaatgatgatgttaa 50515264  T
Q  256 ccccc 260  Q
    |||||    
T  50515263 ccccc 50515259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 147 - 260
Target Start/End: Original strand, 44713298 - 44713408
Alignment:
Q  147 cagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacacattacctttgcattcagacgaaaatga 246  Q
    ||||| ||||||||||||||||||||||||||||||||       ||||||||| |||||||||   ||||||||||||||||||||||  |||||||||    
T  44713298 cagtacagatcatatgacgtgatcaaaaggaaatcgcctaaaaaacgaatggggaaaggtttat---atacacattacctttgcattcaaccgaaaatga 44713394  T
Q  247 tgatgttcaccccc 260  Q
    ||||||| ||||||    
T  44713395 tgatgttaaccccc 44713408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 260
Target Start/End: Original strand, 45910520 - 45910720
Alignment:
Q  57 aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagat 156  Q
    ||||||||||||||||||  ||||||   |||| || |||||| ||| |||||||||||| |||| ||||||  | | ||| ||| | | ||||| ||||    
T  45910520 aaaatgaacacagtttctgtactggtgcagtccgaatttcgaactccagaacgcatgaatccagtccggattgcatagtccggaaaggtacagtacagat 45910619  T
Q  157 catatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacacattacctttgcattcagacgaaaatgatgatgttcac 256  Q
    |||||||| |||||||||||||||| ||        |||||||| |||||   ||||||| ||||||||||||||||||| | |||||||||||| | ||    
T  45910620 catatgacatgatcaaaaggaaatcacctaaaaaatgaatggggaaaggt---ttatatatacattacctttgcattcagtcaaaaatgatgatgctaac 45910716  T
Q  257 cccc 260  Q
    ||||    
T  45910717 cccc 45910720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 6851381 - 6851438
Alignment:
Q  210 ttatatacacattacctttgcattcagacgaaaatgatgatgttcac-ccccttgatg 266  Q
    |||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||    
T  6851381 ttatatacacattacctttgcagtcagacgaaaatgatgatgtttacaccccttgatg 6851438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 253
Target Start/End: Original strand, 16768021 - 16768064
Alignment:
Q  210 ttatatacacattacctttgcattcagacgaaaatgatgatgtt 253  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||    
T  16768021 ttatatacacattacctttgcattcagtcgagaatgatgatgtt 16768064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 253
Target Start/End: Complemental strand, 10548379 - 10548342
Alignment:
Q  216 acacattacctttgcattcagacgaaaatgatgatgtt 253  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  10548379 acacattacctttgcattcagtcgaaaatgatgatgtt 10548342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 260
Target Start/End: Complemental strand, 38619373 - 38619172
Alignment:
Q  56 aaaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtataga 155  Q
    |||||||||||||||||||  ||||||   ||| | | ||||||||||  ||||||||||| |||| ||||||  | | ||| ||| | | ||||| |||    
T  38619373 aaaaatgaacacagtttctgtactggtgcagtctagatttcgaaatccataacgcatgaatccagtccggattgcatagtccggaaaggtacagtacaga 38619274  T
Q  156 tcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacacattacctttgcattcagacgaaaatgatgatgttca 255  Q
    |||||||||||||||||||||||||||||       | ||| ||| |||||   ||||||||||||||||||||||||||| |||||||||||||||| |    
T  38619273 tcatatgacgtgatcaaaaggaaatcgcctaaaaaacaaattgggaaaggt---ttatatacacattacctttgcattcagtcgaaaatgatgatgttaa 38619177  T
Q  256 ccccc 260  Q
    |||||    
T  38619176 ccccc 38619172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 262
Target Start/End: Original strand, 17312586 - 17312839
Alignment:
Q  6 tggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccg 104  Q
    |||||||||||   |||||||| |  ||||||| ||||| ||||| ||||| ||||||||||||||||||  ||||||   ||||  | ||||||||| |    
T  17312586 tggggcatcaaccagaacaaccatatctgaaaacagtgc-aagcatagtcagaaaatgaacacagtttctgtactggtgcagtccggatttcgaaatctg 17312684  T
Q  105 gaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaag 204  Q
     ||| | ||||  |||||||||||| | | ||  || || |  |||| | ||||||||||||||||||||||||||||||       |||||||| ||||    
T  17312685 aaacacgtgaacccagttcggatttcagagtctggaccggtagagtacaaatcatatgacgtgatcaaaaggaaatcgcctaaaaaacgaatgggagaag 17312784  T
Q  205 gtttattatatacacattacctttgcattcagacgaaaatgatgatgttcaccccctt 262  Q
    ||||||   ||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  17312785 gtttat---atacacattacctttgcattcagtcgaaaatgatgatgttaaccccctt 17312839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 9635617 - 9635368
Alignment:
Q  1 tcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaa 99  Q
    |||| ||||||||||| |||||||||| | |||||||| ||||||||||||| ||| ||||||| |||||||| |  |||||| |||| |  | |   ||    
T  9635617 tcatttggggcatcaacaggaacaaccataactgaaaacagtgcgaagcagactcagaaaatgagcacagtttttgtactggtgttgttcggattaaaaa 9635518  T
Q  100 atccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatggg 199  Q
    ||| | || ||||||||||||| | ||||| |  || |  |  | | ||||| ||||||||||||||||||||||||||| ||||       | |||  |    
T  9635517 atctgaaatgcatgaatgcagtccagattttatttttcgtattgctccagtacagatcatatgacgtgatcaaaaggaaagcgcctaaaattcaaataag 9635418  T
Q  200 ggaaggtttattatatacacattacctttgcattcagacgaaaatgatgatgt 252  Q
    |||||||   |||||||||||||| ||||||| ||||| ||||||||||||||    
T  9635417 ggaaggt---ttatatacacattatctttgcactcagatgaaaatgatgatgt 9635368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 253
Target Start/End: Original strand, 19991633 - 19991676
Alignment:
Q  210 ttatatacacattacctttgcattcagacgaaaatgatgatgtt 253  Q
    ||||||||||||||||||||||||||  ||||||||||||||||    
T  19991633 ttatatacacattacctttgcattcattcgaaaatgatgatgtt 19991676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 253
Target Start/End: Complemental strand, 26262739 - 26262696
Alignment:
Q  210 ttatatacacattacctttgcattcagacgaaaatgatgatgtt 253  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||    
T  26262739 ttatatacacattacctttgcattcagacaaaaatgatgttgtt 26262696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 260
Target Start/End: Original strand, 41257417 - 41257668
Alignment:
Q  6 tggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccg 104  Q
    |||||||||||  ||||||||| |  ||||||| ||||| | ||| ||||| ||||| ||||||||||||  ||||||   ||||  | ||||||||||     
T  41257417 tggggcatcaatcggaacaaccatatctgaaaacagtgc-aggcatagtcagaaaataaacacagtttctgtactggtgcagtccggatttcgaaatcca 41257515  T
Q  105 gaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaag 204  Q
    |||||||||||| || | | ||||  | | |||  || | | ||||| | ||||||||||||||||||||||||||||||       ||||||||| |||    
T  41257516 gaacgcatgaatccaatccagattgcatagtccgaaaaggtacagtacatatcatatgacgtgatcaaaaggaaatcgcctaaaaaacgaatggggaaag 41257615  T
Q  205 gtttattatatacacattacctttgcattcagacgaaaatgatgatgttcaccccc 260  Q
    ||||||   ||||||||||||||||||||||| |||||||||||||||| ||||||    
T  41257616 gtttat---atacacattacctttgcattcagtcgaaaatgatgatgttaaccccc 41257668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 260
Target Start/End: Complemental strand, 19215619 - 19215456
Alignment:
Q  94 ttcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncg 193  Q
    |||||| |||||||||||||||| |||| ||||||  | | ||| ||| | | || || ||||||||||||||||||||||| |||| |||       |     
T  19215619 ttcgaactccggaacgcatgaatccagtccggattgcatagtcctgaaaggtacaatacagatcatatgacgtgatcaaaagaaaattgcctaaaaaact 19215520  T
Q  194 aatgggggaaggtttattatatacacattacctttgcattcagacgaaaatgatgatgttcaccccc 260  Q
    |||||||||||||||||   ||||||||||||||||||||||| |||||||||||||||| ||||||    
T  19215519 aatgggggaaggtttat---atacacattacctttgcattcagtcgaaaatgatgatgttaaccccc 19215456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 10348777 - 10348728
Alignment:
Q  218 acattacctttgcattcagacgaaaatgatgatgttcac-ccccttgatg 266  Q
    ||||||||||||||||||||||||||| ||| |||| || ||||||||||    
T  10348777 acattacctttgcattcagacgaaaataatgttgttgacgccccttgatg 10348728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 38965829 - 38965566
Alignment:
Q  1 tcatgtggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaa 99  Q
    |||| |||||||||||  ||||||||| | | |||||  ||||| ||||| ||||| ||||||||||||||||||  |||||| | ||||  | ||||||    
T  38965829 tcatttggggcatcaaccggaacaaccataattgaaatcagtgccaagcatagtcagaaaatgaacacagtttctgtactggtgtagtccggatttcgaa 38965730  T
Q  100 atccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatggg 199  Q
    |||| ||| ||||||||| ||| |||| ||    |||| ||||  | ||||| | |||||||||| |||||||||| ||||||||       |||||||     
T  38965729 atccagaatgcatgaatgtagtccggaattcgttttccggaacagt-cagtacatatcatatgacatgatcaaaagaaaatcgcctaaaaaacgaatgga 38965631  T
Q  200 ggaaggtttattatatacacattacctttgcattcagacgaaaatgatgatgttca-cccccttgatg 266  Q
    |||||||||||   ||||||||||| |||| ||||||||||||||||||||||| | |||||||||||    
T  38965630 ggaaggtttat---atacacattacatttgaattcagacgaaaatgatgatgttaatcccccttgatg 38965566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 57 - 266
Target Start/End: Original strand, 13850826 - 13851034
Alignment:
Q  57 aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagat 156  Q
    ||||||||||||||||||  ||||||   ||||  | | |||| |||||||  ||||||| |||| ||||||  | | ||| ||| | | ||||| | ||    
T  13850826 aaaatgaacacagtttctgtactggtgcagtccggattacgaactccggaaaccatgaatccagtgcggattgcatagtccggaaaggtacagtacaaat 13850925  T
Q  157 catatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacacattacctttgcattcagacgaaaatgatgatgtt--c 254  Q
    ||||||||||||||||||||||||||||       |||||||||||| | ||  |||||||||||||||||||||||||| ||||||||||||||||  |    
T  13850926 catatgacgtgatcaaaaggaaatcgcctaaaaa-cgaatgggggaaaggtt--tatatacacattacctttgcattcagtcgaaaatgatgatgttaac 13851022  T
Q  255 acccccttgatg 266  Q
    ||||||||||||    
T  13851023 acccccttgatg 13851034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 260
Target Start/End: Original strand, 20236322 - 20236484
Alignment:
Q  94 ttcgaaatccggaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncg 193  Q
    ||||||||||||||||||||||| |||||||||||| ||| ||| || |     | || | ||||||||||||||||||||||||||||||       |     
T  20236322 ttcgaaatccggaacgcatgaatccagttcggatttcaaagtccggatctgaagattacatatcatatgacgtgatcaaaaggaaatcgcctaaaaa-ca 20236420  T
Q  194 aatgggggaaggtttattatatacacattacctttgcattcagacgaaaatgatgatgttcaccccc 260  Q
    ||| |||||||||||||   |||||||||||||| |||||||| |||||||||||||||| ||||||    
T  20236421 aatcggggaaggtttat---atacacattaccttagcattcagtcgaaaatgatgatgttaaccccc 20236484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 155 - 266
Target Start/End: Original strand, 23352198 - 23352307
Alignment:
Q  155 atcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaaggtttattatatacacattacctttgcattcagacgaaaatgatgatgttc 254  Q
    |||||||||||||||||||||||||| |||       ||||||||| |||||||||   ||||||||||||||||||||||| ||||||||||||||||     
T  23352198 atcatatgacgtgatcaaaaggaaattgcctaaaaaacgaatggggaaaggtttat---atacacattacctttgcattcagtcgaaaatgatgatgtta 23352294  T
Q  255 acc-cccttgatg 266  Q
    ||| |||||||||    
T  23352295 accgcccttgatg 23352307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 260
Target Start/End: Complemental strand, 25761416 - 25761165
Alignment:
Q  6 tggggcatcaagaggaacaaccttgactgaaaatagtgcgaagcagagtca-aaaatgaacacagtttctacactggttttgtccaaaattcgaaatccg 104  Q
    |||||||||||  ||||||||| |  ||||||| ||||| | ||| ||||| |||||||||||||||| |  ||||||   ||||  | |||||| ||||    
T  25761416 tggggcatcaaccggaacaaccatatctgaaaacagtgc-aggcatagtcagaaaatgaacacagtttttgtactggtgcagtccggatttcgaactccg 25761318  T
Q  105 gaacgcatgaatgcagttcggatttgaaattccagaacgtttcagtatagatcatatgacgtgatcaaaaggaaatcgccnnnnnnncgaatgggggaag 204  Q
    |||||||||||| ||||  |||||  | | ||| ||| | | ||||| | ||||||||||||||||||||| |||| |||         ||||||| |||    
T  25761317 gaacgcatgaatccagtctggattgcatagtccggaaaggtacagtacatatcatatgacgtgatcaaaagaaaatagcctaaaaaatcaatggggaaag 25761218  T
Q  205 gtttattatatacacattacctttgcattcagacgaaaatgatgatgttcaccccc 260  Q
    ||||||   ||||||||||||||||||||||| | |||||||||||||| ||||||    
T  25761217 gtttat---atacacattacctttgcattcagtcaaaaatgatgatgttaaccccc 25761165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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