View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_220 (Length: 282)

Name: NF9264A_low_220
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_220
NF9264A_low_220
[»] chr5 (1 HSPs)
chr5 (6-282)||(4968750-4969037)


Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 282
Target Start/End: Original strand, 4968750 - 4969037
Alignment:
Q  6 agaaacaaagagatgattgcgagagagaaa-gaaatatatatcattctgacggtgtaacataacatcattcatccgacgattaaaataacttgtccatcg 104  Q
    |||| |||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||| ||| ||||||| |||||||||||||||||    
T  4968750 agaagcaaagagatgattgagagagagaaaagaaatatatatcattctgatggtgtaacataacatcatttatcggacgattcaaataacttgtccatcg 4968849  T
Q  105 tgagagacttgcttcacttgcccaccctagcatccgcgccaagttcactttgttttgaaacataacttct----------ttcaattctttgtaatttca 194  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||          ||||||||||||||||||||    
T  4968850 tgagagacttgcttcacttgcccaccctagcatcggcgccaagttcactttgttttgaaacataacttctttcggttcagttcaattctttgtaatttca 4968949  T
Q  195 attcctcatgtttcacatccaaatcgttgaatatttctttaaaccaaaacattttccaaaactttcaatacataccatcacacacata 282  Q
    ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  4968950 attcctcatatttaacatccaaatcgttgaacatttctttaaaccaaaacattttccaaaactatcaatacacaccatcacacacata 4969037  T

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