View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_221 (Length: 280)

Name: NF9264A_low_221
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_221
NF9264A_low_221
[»] chr1 (16 HSPs)
chr1 (5-274)||(13244659-13244928)
chr1 (4-171)||(13271474-13271641)
chr1 (35-255)||(13085911-13086131)
chr1 (28-180)||(30368269-30368421)
chr1 (5-172)||(12964013-12964180)
chr1 (28-248)||(13100812-13101031)
chr1 (4-255)||(13081002-13081253)
chr1 (28-180)||(13070337-13070489)
chr1 (33-180)||(13094278-13094425)
chr1 (28-250)||(13007009-13007231)
chr1 (28-250)||(13204268-13204490)
chr1 (4-172)||(19279305-19279473)
chr1 (33-180)||(13129707-13129854)
chr1 (33-180)||(13161400-13161547)
chr1 (33-254)||(13065379-13065600)
chr1 (112-171)||(13010661-13010720)
[»] chr6 (1 HSPs)
chr6 (49-140)||(31380253-31380344)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 274
Target Start/End: Original strand, 13244659 - 13244928
Alignment:
Q  5 agatggacatcagttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagct 104  Q
    ||||||| ||||| ||||||||| ||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13244659 agatggatatcagctagaggagggattataaatgtaccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatcttagct 13244758  T
Q  105 ttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcg 204  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||    
T  13244759 tcgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcg 13244858  T
Q  205 catgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatataacaaagttgcaagtgtgatg 274  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  13244859 catgaaacacggcttaaaggtcgaagtcagtaaaagatgcatttgatataacaaagttgtaagtgtgatg 13244928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 4 - 171
Target Start/End: Complemental strand, 13271641 - 13271474
Alignment:
Q  4 gagatggacatcagttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagc 103  Q
    |||||||| ||||| || ||||   ||| ||||||| || ||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||    
T  13271641 gagatggatatcagataaaggacaaattatacatgtaccatcttacaagttcatagcattcaatgcaggtcctagaagctgtcttgggaaagatattagc 13271542  T
Q  104 tttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtca 171  Q
    ||| |||||||||||||||||||||||||| | ||||||||||||| |||||| ||||||||||||||    
T  13271541 tttattcaaatgaaaatggttgcagcttctgtattatggaagtttcacatacatgtggtggaaggtca 13271474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 35 - 255
Target Start/End: Complemental strand, 13086131 - 13085911
Alignment:
Q  35 catgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctt 134  Q
    ||||| || |||| |||||||||||| || |||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||     
T  13086131 catgtaccatcttgcaagttcatagcatttaatgcaggtcctcgaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgcta 13086032  T
Q  135 tgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcag 234  Q
    ||||||||||||||| |||||| || |||||||||||  ||||||| |  |||  ||||||||  || |||||| |||| || || || ||| || | ||    
T  13086031 tgttatggaagtttcacatacaagttgtggaaggtcattctgtaactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttag 13085932  T
Q  235 taaaagatgcatttgatataa 255  Q
    ||||||||| |||||||||||    
T  13085931 taaaagatgaatttgatataa 13085911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 28 - 180
Target Start/End: Original strand, 30368269 - 30368421
Alignment:
Q  28 cattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgca 127  Q
    |||| ||||||| || |||||||||||||||||||||||| |||| |||||||||||||| || |||||| |||| || ||||||||||| |||||||||    
T  30368269 cattatacatgtaccatcttacaagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagtttcgttcaaatgaagatggttgca 30368368  T
Q  128 gcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaac 180  Q
    ||| | |||||||||||||||| ||||||||| ||||||||||||||||||||    
T  30368369 gctgccttgttatggaagtttcacatacaggtcgtggaaggtcaccctgtaac 30368421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 5 - 172
Target Start/End: Original strand, 12964013 - 12964180
Alignment:
Q  5 agatggacatcagttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagct 104  Q
    ||||||| ||||  ||||||||  ||| |||| || || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12964013 agatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatattagct 12964112  T
Q  105 ttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcac 172  Q
    |||||||||||||||||||||| |||  | |||| |||||||||| |||| | |||||||||||||||    
T  12964113 ttgttcaaatgaaaatggttgctgctaatgtgttgtggaagtttcacatagaagtggtggaaggtcac 12964180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 28 - 248
Target Start/End: Complemental strand, 13101031 - 13100812
Alignment:
Q  28 cattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgca 127  Q
    |||| ||||||| || |||||||||||||||||||||||| |||| |||||||||||||| || || |||||||||||  |||||||||| ||||| |||    
T  13101031 cattatacatgtaccatcttacaagttcatagctttcaat-caggacctagaagttgtatgggtaaggatattagcttcattcaaatgaagatggtcgca 13100933  T
Q  128 gcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcg 227  Q
    ||| ||||||||  |||||||| ||||||||||||||||||||||||| |||| | ||    |||| |||  |||| ||||||||| ||||| ||||||     
T  13100932 gctgctttgttaccgaagtttcacatacaggtggtggaaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtca 13100833  T
Q  228 aaatcagtaaaagatgcattt 248  Q
    || ||| ||||||||||||||    
T  13100832 aagtcactaaaagatgcattt 13100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 4 - 255
Target Start/End: Original strand, 13081002 - 13081253
Alignment:
Q  4 gagatggacatcagttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagc 103  Q
    |||||||| ||||| |||||||   ||| |||| || |||||||| ||||||||||| || ||||||||||| ||||| ||| ||||||||||||||||     
T  13081002 gagatggatatcagatagaggacaaattatacaagtgccgtcttataagttcatagcgtttaatgcaggtccaagaagctgtcttgggaaagatattagt 13081101  T
Q  104 tttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttc 203  Q
    ||| ||||||||||||||||||||||| |  | ||||  ||||||| ||| |||||||||||||||||| |  |||  |  ||   |||||||  |||||    
T  13081102 tttcttcaaatgaaaatggttgcagctgcagttttatttaagtttcacattcaggtggtggaaggtcactcaataattcctagggtttctattctccttc 13081201  T
Q  204 gcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatataa 255  Q
    ||||| |||| ||||| |||||| ||||  ||||||||||||||||||||||    
T  13081202 gcatggaacatggctttaaggtcaaaattcgtaaaagatgcatttgatataa 13081253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 28 - 180
Target Start/End: Original strand, 13070337 - 13070489
Alignment:
Q  28 cattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgca 127  Q
    |||| ||||||| || |||||||||||||||||||||||| ||||||| ||||||||| | || |||||| |||| ||  |||||||||| ||||| |||    
T  13070337 cattatacatgttccatcttacaagttcatagctttcaatacaggtccgagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgca 13070436  T
Q  128 gcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaac 180  Q
    ||| ||||||||  |||||||| ||||||||||||||||||||||||||||||    
T  13070437 gctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaac 13070489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 33 - 180
Target Start/End: Complemental strand, 13094425 - 13094278
Alignment:
Q  33 tacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttc 132  Q
    ||||||| || |||||||||||||||||||||||  |||| || |||| |||||| || ||||||||||| ||  |||||||||| ||||| |||||| |    
T  13094425 tacatgtaccatcttacaagttcatagctttcaacacaggacccagaatttgtataggtaaagatattagtttcattcaaatgaagatggtcgcagctgc 13094326  T
Q  133 tttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaac 180  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  13094325 tttgttacggaagtttcacatacaggtggtggaaggtcaccctgtaac 13094278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 28 - 250
Target Start/End: Complemental strand, 13007231 - 13007009
Alignment:
Q  28 cattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgca 127  Q
    |||| ||||||| || |||||||||||||||||||||||| ||||||||||||||||||| || || |||||||||||  |||||||||| ||||| |||    
T  13007231 cattatacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgca 13007132  T
Q  128 gcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcg 227  Q
    ||  ||||||||   ||||||| |||| ||||||||| |||||||||| |||| | ||    |||| |||  |||| ||||||||| ||||| |||||      
T  13007131 gcagctttgttaccaaagtttcacataaaggtggtggcaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtta 13007032  T
Q  228 aaatcagtaaaagatgcatttga 250  Q
    || ||| ||||||||||||||||    
T  13007031 aagtcactaaaagatgcatttga 13007009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 28 - 250
Target Start/End: Complemental strand, 13204490 - 13204268
Alignment:
Q  28 cattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgca 127  Q
    |||| ||||||| || |||||||||||||||||||||||| ||||||||||||||||| | || |||||| |||| ||  |||||||||| ||||| |||    
T  13204490 cattatacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgca 13204391  T
Q  128 gcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcg 227  Q
    ||| ||||||||  ||| |||| |||| || | |||||||||||||||||||| |  |  | |||| |||  |||| ||||||| | || ||||||||      
T  13204390 gctgctttgttacagaattttcacataaagatagtggaaggtcaccctgtaaccccaaagatttcttttgttcttcacatgaaatatggtttaaaggtta 13204291  T
Q  228 aaatcagtaaaagatgcatttga 250  Q
    || ||| ||||||||||||||||    
T  13204290 aagtcactaaaagatgcatttga 13204268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 19279305 - 19279473
Alignment:
Q  4 gagatggacatcagttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagc 103  Q
    |||||||| ||| | |||||||   ||| ||||||| || || |||||||||||||| || ||||||||||| ||||| ||| | || ||||||||||      
T  19279305 gagatggatatcggatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattact 19279404  T
Q  104 tttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcac 172  Q
    ||  ||||||||||||||||||||||| || | ||||||||||||||||||||||| ||||||||||||    
T  19279405 ttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcgcatacaggtcgtggaaggtcac 19279473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 180
Target Start/End: Complemental strand, 13129854 - 13129707
Alignment:
Q  33 tacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttc 132  Q
    ||||||| || |||||||||||| ||||||||||  |||| || |||| |||||| || |||||| |||| ||  |||||||||| ||||| |||||| |    
T  13129854 tacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgc 13129755  T
Q  133 tttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaac 180  Q
    |||||||  |||||||| ||||||||||||||||||||||||||||||    
T  13129754 tttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaac 13129707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 180
Target Start/End: Complemental strand, 13161547 - 13161400
Alignment:
Q  33 tacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttc 132  Q
    ||||||| || ||||||||||||||| |||||||  |||| || |||| |||||| || |||||| |||| ||  |||||||||| ||||| |||||| |    
T  13161547 tacatgtaccttcttacaagttcatatctttcaacacaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgc 13161448  T
Q  133 tttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaac 180  Q
    ||||||| ||||||||| ||||||||||||||||||||||| ||||||    
T  13161447 tttgttacggaagtttcacatacaggtggtggaaggtcaccttgtaac 13161400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 33 - 254
Target Start/End: Original strand, 13065379 - 13065600
Alignment:
Q  33 tacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttc 132  Q
    ||||||| |||||||||||||||||||||||||||||||| || ||||||||| | || |||||||| | ||| ||| ||||||| |||| ||| ||  |    
T  13065379 tacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatggctgccgcggc 13065478  T
Q  133 tttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatc 232  Q
    | |  ||||||||||| |||||||  | ||||| ||||| |||||||| |  ||   ||||||| ||||  | |||||||| ||||| ||||||  | ||    
T  13065479 tatactatggaagttttgcatacatttagtggatggtcatcctgtaactccaaggctttctattaccctcggaatgaaacatggcttgaaggtcatagtc 13065578  T
Q  233 agtaaaagatgcatttgatata 254  Q
    | ||||||||||||||||||||    
T  13065579 actaaaagatgcatttgatata 13065600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 13010720 - 13010661
Alignment:
Q  112 aatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtca 171  Q
    |||||| ||||| ||||||  |||||||||||| ||||||||||| ||||||||||||||    
T  13010720 aatgaagatggtcgcagctgatttgttatggaaatttcgcatacaagtggtggaaggtca 13010661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 31380253 - 31380344
Alignment:
Q  49 caagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttat 140  Q
    |||||||||| |||||||| |||| ||  ||||||||||||| |||||| |||| ||  ||||||| || |||  ||| |||||||||||||    
T  31380253 caagttcatatctttcaatacaggacccggaagttgtattggtaaagatcttagtttcattcaaattaagatgtctgcggcttctttgttat 31380344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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