View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_223 (Length: 278)

Name: NF9264A_low_223
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_223
NF9264A_low_223
[»] chr6 (27 HSPs)
chr6 (7-272)||(5688749-5689020)
chr6 (7-272)||(5177917-5178177)
chr6 (7-272)||(5279742-5280008)
chr6 (147-257)||(5242504-5242614)
chr6 (123-272)||(5126597-5126746)
chr6 (45-272)||(5065338-5065566)
chr6 (147-256)||(5427094-5427203)
chr6 (152-272)||(5346207-5346327)
chr6 (155-270)||(5398226-5398341)
chr6 (154-272)||(5180773-5180891)
chr6 (149-253)||(5100812-5100916)
chr6 (149-253)||(5135913-5136017)
chr6 (149-272)||(5156007-5156130)
chr6 (149-272)||(5372275-5372398)
chr6 (138-272)||(5098389-5098523)
chr6 (151-252)||(23127306-23127407)
chr6 (149-272)||(5351578-5351701)
chr6 (147-272)||(5352855-5352980)
chr6 (149-271)||(2939094-2939216)
chr6 (147-272)||(5072674-5072799)
chr6 (154-259)||(5283223-5283328)
chr6 (154-248)||(5439213-5439307)
chr6 (156-265)||(5253718-5253827)
chr6 (180-272)||(5334363-5334455)
chr6 (151-265)||(5124439-5124553)
chr6 (154-259)||(5256113-5256218)
chr6 (154-265)||(5448794-5448905)
[»] chr4 (7 HSPs)
chr4 (126-258)||(4122615-4122747)
chr4 (76-254)||(25569036-25569217)
chr4 (114-259)||(4132577-4132719)
chr4 (149-259)||(4319296-4319406)
chr4 (147-193)||(7884147-7884193)
chr4 (147-192)||(4346621-4346666)
chr4 (147-192)||(4362810-4362855)
[»] chr3 (4 HSPs)
chr3 (155-273)||(47985393-47985511)
chr3 (155-273)||(48003967-48004085)
chr3 (155-273)||(47994680-47994798)
chr3 (155-273)||(48013252-48013370)
[»] chr7 (1 HSPs)
chr7 (147-272)||(36212913-36213038)
[»] scaffold0294 (1 HSPs)
scaffold0294 (156-252)||(7878-7974)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 272
Target Start/End: Original strand, 5688749 - 5689020
Alignment:
Q  7 tcattttcatcaccactacta---acaatgacacggtaatcttgtgcattagaagagacctctcttaatagcattcatcttcatcaccacta---cacac 100  Q
    |||||||||||||||||||||   |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  5688749 tcattttcatcaccactactaccaacaatgacattgtaatcttgtgcattagaagagacctctcttaatagcattcatcttcatcaccactactacacac 5688848  T
Q  101 aatatcattttcttcttgttcttgacattgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5688849 aatatcattttcttcttgttcttgacattgctccatattttcacgaattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttc 5688948  T
Q  201 tcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactctctgtccctcttcatct 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5688949 tcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactctctgtccctcttcatct 5689020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 7 - 272
Target Start/End: Complemental strand, 5178177 - 5177917
Alignment:
Q  7 tcattttcatcaccactactaacaatgacacggtaatcttgtgcattagaagagacctctctta-atagcattcatcttcatcaccactacacacaatat 105  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||| | | |||||||||||||||||||||||||||||||      
T  5178177 tcattttcatcaccactactaacaatgacattgtaatcttgtgcattagaagagacttctctgacaaagcattcatcttcatcaccactacacacaat-- 5178080  T
Q  106 cattttcttcttgttcttgacattgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaa 205  Q
        ||||||||||||||| ||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5178079 ----ttcttcttgttcttggcattgctccattttttctccaattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaa 5177984  T
Q  206 aacagaaacaacctccactttgttacaaggttctatacttgatactactctctgtccctcttcatct 272  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5177983 aacaacaacaacctccactttgttacaaggttctatacttgatactactctctgaccctcttcatct 5177917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 7 - 272
Target Start/End: Complemental strand, 5280008 - 5279742
Alignment:
Q  7 tcattttcatcaccactacta---acaatgacacggtaatcttgtgcattagaagagacctctctta-atagcattcatcttcatcaccactacacacaa 102  Q
    |||||||||||||||||||||   |||||||||  ||| |||||||||||||||||||| ||||| | | ||||||||||||||||||||||||||||||    
T  5280008 tcattttcatcaccactactactaacaatgacattgtattcttgtgcattagaagagacttctctgacaaagcattcatcttcatcaccactacacacaa 5279909  T
Q  103 tatcattttcttcttgttcttgaca---ttgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgtt 199  Q
    |      ||||||||||||||| ||   ||||||||| ||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5279908 t------ttcttcttgttcttggcaatattgctccattttttctccaattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgtt 5279815  T
Q  200 gtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactctctgtccctcttcatct 272  Q
     |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5279814 ctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactactctctgaccctcttcatct 5279742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 147 - 257
Target Start/End: Original strand, 5242504 - 5242614
Alignment:
Q  147 attggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttg 246  Q
    |||||||||||||||||||||||||||  ||| |||||||||||||||| ||| ||||||||| |||| |||||||||||||||| |||||||||||||     
T  5242504 attggttcatcatatacgagataaactactgtcttcttcacaatgaaactgttctcaaaaacaaaaacgacctccactttgttaccaggttctatacttc 5242603  T
Q  247 atactactctc 257  Q
    |||||||||||    
T  5242604 atactactctc 5242614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 123 - 272
Target Start/End: Original strand, 5126597 - 5126746
Alignment:
Q  123 tgacattgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctcca 222  Q
    |||||||||| |||| ||||||  |||||||||||||||| ||||||||| | ||| |||||||||||||||||||| | |||||||  ||||| ||| |    
T  5126597 tgacattgcttcatagtttcaccaattggttcatcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaa 5126696  T
Q  223 ctttgttacaaggttctatacttgatactactctctgtccctcttcatct 272  Q
    ||||||||| || |||||||||||||||||||||||  ||||| ||||||    
T  5126697 ctttgttaccagcttctatacttgatactactctctccccctcctcatct 5126746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 45 - 272
Target Start/End: Original strand, 5065338 - 5065566
Alignment:
Q  45 ttgtgcattagaagagacctctctta-atagcattcatcttcatcaccactacacacaatatcattttcttcttgttcttgacattgctccatattttca 143  Q
    |||||||| |||||||| ||| | || | ||||||||| ||||||||| ||||  |||||| |||| |  |||||| | ||||| | ||||   ||||||    
T  5065338 ttgtgcatgagaagagatctcgcctagaaagcattcattttcatcaccgctactaacaataacattcttatcttgtgcatgacactcctcccccttttca 5065437  T
Q  144 cggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatac 243  Q
       |||||||||||||||| |||||||||||||||  ||||||||| ||||||||| |||||||||  |||||  |||||||| || | |||||| ||||    
T  5065438 gcaattggttcatcatatatgagataaactgttgtcctcttcacaacgaaaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatac 5065537  T
Q  244 ttgatactactctctgtccctcttcatct 272  Q
    |||||||||||||||| ||||| ||||||    
T  5065538 ttgatactactctctgcccctcctcatct 5065566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 147 - 256
Target Start/End: Complemental strand, 5427203 - 5427094
Alignment:
Q  147 attggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttg 246  Q
    |||||||||||||||||||||||||||  ||| ||| |||||| ||||| ||| ||||||||| |||| ||||||| |||||||| ||||||||||||||    
T  5427203 attggttcatcatatacgagataaactactgtcttcgtcacaacgaaactgttctcaaaaacaaaaacgacctccattttgttaccaggttctatacttg 5427104  T
Q  247 atactactct 256  Q
    ||||||||||    
T  5427103 atactactct 5427094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 152 - 272
Target Start/End: Complemental strand, 5346327 - 5346207
Alignment:
Q  152 ttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatact 251  Q
    ||||||||||| |||||||| || ||| ||||||||||||||||| || |||| ||||   ||||||||||||||||||| ||||||||||||||||||     
T  5346327 ttcatcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgataca 5346228  T
Q  252 actctctgtccctcttcatct 272  Q
    |||||||| ||||| ||||||    
T  5346227 actctctggccctcctcatct 5346207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 155 - 270
Target Start/End: Complemental strand, 5398341 - 5398226
Alignment:
Q  155 atcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 254  Q
    ||||||||| |||||||||||||| ||||||||||||||| | || || |||||| | |||||||| |||||||||| |||||||||||||||||||||     
T  5398341 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcgaaaacaaagacaacctcaactttgttaccaggttctatacttgatactacc 5398242  T
Q  255 ctctgtccctcttcat 270  Q
    || || ||||||||||    
T  5398241 ctttgcccctcttcat 5398226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 154 - 272
Target Start/End: Original strand, 5180773 - 5180891
Alignment:
Q  154 catcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactac 253  Q
    |||||||||| ||||||| || ||| ||||||||||||||||  || ||||||||| |||| ||||||||||||||||  |||||||| |||||||||||    
T  5180773 catcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactac 5180872  T
Q  254 tctctgtccctcttcatct 272  Q
     ||||| ||||||||||||    
T  5180873 cctctgaccctcttcatct 5180891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 149 - 253
Target Start/End: Original strand, 5100812 - 5100916
Alignment:
Q  149 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 248  Q
    ||||||||| |||||||||||||||| ||| || ||||||||||||| ||| |||||||||  ||| ||||||||||||||||  |||||||||||||||    
T  5100812 tggttcatcgtatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgat 5100911  T
Q  249 actac 253  Q
    |||||    
T  5100912 actac 5100916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 149 - 253
Target Start/End: Original strand, 5135913 - 5136017
Alignment:
Q  149 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 248  Q
    ||||||||| |||||||||||||||| ||| || ||||||||||||| ||| |||||||||  ||| ||||||||||||||||  |||||||||||||||    
T  5135913 tggttcatcgtatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgat 5136012  T
Q  249 actac 253  Q
    |||||    
T  5136013 actac 5136017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 272
Target Start/End: Original strand, 5156007 - 5156130
Alignment:
Q  149 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 248  Q
    ||||||||| ||||| |||||||||||||| |||||||||||||||    | || |||||| ||   |||||||||||||||| |||||||| |||||||    
T  5156007 tggttcatcgtatacaagataaactgttgtcttcttcacaatgaaattaatctcgaaaacaaaatggacctccactttgttaccaggttctagacttgat 5156106  T
Q  249 actactctctgtccctcttcatct 272  Q
    ||||| ||||| ||||||||||||    
T  5156107 actaccctctgcccctcttcatct 5156130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 272
Target Start/End: Complemental strand, 5372398 - 5372275
Alignment:
Q  149 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 248  Q
    ||||||||| ||||||||||||| |||||| ||||||||||||||| | || || | |||| ||   | |||||||||||||| |||||||| |||||||    
T  5372398 tggttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggatctccactttgttaccaggttctagacttgat 5372299  T
Q  249 actactctctgtccctcttcatct 272  Q
    ||||| ||||| ||||||||||||    
T  5372298 actaccctctgcccctcttcatct 5372275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 272
Target Start/End: Complemental strand, 5098523 - 5098389
Alignment:
Q  138 ttttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggtt 237  Q
    |||||||  ||| ||||||||||||| |||||||||| ||| || ||||||||||||| ||| || ||||||  ||  |||||||||||||||| |||||    
T  5098523 ttttcaccaatttgttcatcatataccagataaactgctgtctttttcacaatgaaactgttctcgaaaacaacaatgacctccactttgttaccaggtt 5098424  T
Q  238 ctatacttgatactactctctgtccctcttcatct 272  Q
    |||||||||||| ||| ||||| | ||| ||||||    
T  5098423 ctatacttgatattaccctctggctctcctcatct 5098389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 151 - 252
Target Start/End: Original strand, 23127306 - 23127407
Alignment:
Q  151 gttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatac 250  Q
    ||||||||||||| |||||||||||||| |||||||||| |||||| || ||||||||   ||||||||||| |||||||| |||||||  |||||||||    
T  23127306 gttcatcatatacaagataaactgttgtattcttcacaacgaaaccattctcaaaaacgacaacaacctccattttgttaccaggttctgcacttgatac 23127405  T
Q  251 ta 252  Q
    ||    
T  23127406 ta 23127407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 149 - 272
Target Start/End: Complemental strand, 5351701 - 5351578
Alignment:
Q  149 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 248  Q
    |||||||||||||||||||||||||  ||| || ||||||||| || | || || |||||| |||  ||||||||||||||||  |||||||||||||||    
T  5351701 tggttcatcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaatgacctccactttgttactgggttctatacttgat 5351602  T
Q  249 actactctctgtccctcttcatct 272  Q
    ||||  ||||| ||||| ||||||    
T  5351601 actaacctctgcccctcctcatct 5351578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 272
Target Start/End: Original strand, 5352855 - 5352980
Alignment:
Q  147 attggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttg 246  Q
    ||||||| ||||||||| ||||||| |||||| |||||||| |||||||  || || ||||||  ||| ||||| ||||||| || ||| || |||||||    
T  5352855 attggtttatcatataccagataaattgttgtcttcttcacgatgaaacaattctcgaaaacaataaccacctctactttgtcaccaggatccatacttg 5352954  T
Q  247 atactactctctgtccctcttcatct 272  Q
    ||||||||||||| ||||| ||||||    
T  5352955 atactactctctgcccctcctcatct 5352980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 149 - 271
Target Start/End: Complemental strand, 2939216 - 2939094
Alignment:
Q  149 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 248  Q
    ||||||||||||||||||||||| |||||  |||||||||||| || | || || | |||| ||   |||||||||||||||| ||||| || |||||||    
T  2939216 tggttcatcatatacgagataaattgttgccttcttcacaatgcaatcattctcgataacaaaatggacctccactttgttaccaggttatagacttgat 2939117  T
Q  249 actactctctgtccctcttcatc 271  Q
    ||||| ||||| || ||||||||    
T  2939116 actaccctctgcccttcttcatc 2939094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 272
Target Start/End: Original strand, 5072674 - 5072799
Alignment:
Q  147 attggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttg 246  Q
    |||| |||||| |||| |||||||| | |||| || |||||||||||| |||| |||| ||||   ||||||||||||| ||||| ||| ||||||||||    
T  5072674 attgattcatcgtatatgagataaattattgtctttttcacaatgaaatcgttctcaacaacaacgacaacctccacttggttaccaggctctatacttg 5072773  T
Q  247 atactactctctgtccctcttcatct 272  Q
    |||||| |||||  ||||| ||||||    
T  5072774 atactaatctctcgccctcatcatct 5072799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 259
Target Start/End: Original strand, 5283223 - 5283328
Alignment:
Q  154 catcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactac 253  Q
    |||||||||| ||||||| || ||| |||||||||||||||| ||| ||||||||| | |  ||||||||||||||||  ||||| |||||||||| |||    
T  5283223 catcatataccagataaattgctgtcttcttcacaatgaaactgttttcaaaaacaaatatgacctccactttgttacctggttcgatacttgatattac 5283322  T
Q  254 tctctg 259  Q
     |||||    
T  5283323 cctctg 5283328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 248
Target Start/End: Complemental strand, 5439307 - 5439213
Alignment:
Q  154 catcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 248  Q
    ||||||||||||||||| ||| ||| || ||  |||||||| | || |  |||||| ||||||||||||||||||||| ||||||||||||||||    
T  5439307 catcatatacgagataagctgctgtctttttggcaatgaaatcattcttgaaaacaaaaacaacctccactttgttaccaggttctatacttgat 5439213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 265
Target Start/End: Complemental strand, 5253827 - 5253718
Alignment:
Q  156 tcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactc 255  Q
    ||||||| |||||||||||| ||  ||||||||||||||| ||| |||||||||  ||||| ||||||||| || | |||||| |||||| ||| |||||    
T  5253827 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacaacaacaaactccactttatttccaggttcaatacttaataatactc 5253728  T
Q  256 tctgtccctc 265  Q
    | || |||||    
T  5253727 tttgcccctc 5253718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 272
Target Start/End: Complemental strand, 5334455 - 5334363
Alignment:
Q  180 ttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactctctgtccctcttcatct 272  Q
    ||||||| ||||||| | || || |||||| |||| |||||||||||||||| |||||||| || ||||||||| ||||  ||||||||||||    
T  5334455 ttcttcaaaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatct 5334363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 265
Target Start/End: Original strand, 5124439 - 5124553
Alignment:
Q  151 gttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatac 250  Q
    ||||||||||||  | ||| | |||||| | |||||||||||| | ||| | ||||||| ||||||  |||||||| |||| |||||||||||| |||||    
T  5124439 gttcatcatatataatatacattgttgtctccttcacaatgaagcggttcttaaaaacaaaaacaaattccactttattaccaggttctatactcgatac 5124538  T
Q  251 tactctctgtccctc 265  Q
    || ||| || |||||    
T  5124539 taatctatgcccctc 5124553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 259
Target Start/End: Original strand, 5256113 - 5256218
Alignment:
Q  154 catcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactac 253  Q
    |||||||||| | ||||| || ||| ||||||||||||||| | || |  |||||| | || ||||||||||||||||  ||||| |||||||||| |||    
T  5256113 catcatataccaaataaattgctgtcttcttcacaatgaaatcattcttgaaaacaaatacgacctccactttgttacctggttcaatacttgatattac 5256212  T
Q  254 tctctg 259  Q
     |||||    
T  5256213 cctctg 5256218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 265
Target Start/End: Complemental strand, 5448905 - 5448794
Alignment:
Q  154 catcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactac 253  Q
    |||||||||| ||||| |||  ||| |||| |||| ||||| | || || |||||| |||| | |||||||||||| |  |||||||||||||||||||     
T  5448905 catcatataccagatatactactgtcttctccacagtgaaatcattctcgaaaacaaaaacgatctccactttgtttccgggttctatacttgatactaa 5448806  T
Q  254 tctctgtccctc 265  Q
     ||||| |||||    
T  5448805 cctctgcccctc 5448794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 4122615 - 4122747
Alignment:
Q  126 cattgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactt 225  Q
    |||||||| || ||||||| ||||||||||||||||| ||||||||||| ||| ||| |||||||||||| |||  ||||||||  ||||| ||||||||    
T  4122615 cattgctctattttttcaccgattggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccactt 4122714  T
Q  226 tgttacaaggttctatacttgatactactctct 258  Q
    ||| || |||||| ||| ||||||| |||||||    
T  4122715 tgtcaccaggttccatatttgataccactctct 4122747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 254
Target Start/End: Complemental strand, 25569217 - 25569036
Alignment:
Q  76 attcatcttcatcaccactacacacaatatcattttcttcttgttcttgacattgctccatattttcacggattggttcatcatatacgagataaactgt 175  Q
    |||||| |||||||||| || | |||||| |||||||||||  |  ||||| |||||||||  |||| |  ||| ||||||| |||||||||||||||||    
T  25569217 attcattttcatcaccaataaaaacaatagcattttcttctgatgtttgactttgctccattatttcgccaattagttcatcgtatacgagataaactgt 25569118  T
Q  176 tgttttcttcacaatgaaaccgttg---tcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 254  Q
    ||| ||||||||  |||||| |      ||||||||| ||||||||||||||||||| | ||||||||||||||||||||||    
T  25569117 tgtattcttcactttgaaactgcgccactcaaaaacaaaaacaacctccactttgtttccaggttctatacttgatactact 25569036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 114 - 259
Target Start/End: Original strand, 4132577 - 4132719
Alignment:
Q  114 tcttgttcttgacattgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaa 213  Q
    |||||| | ||||||||| ||| ||||||||  |||||||||||||||| ||||||||||| ||| ||| |||||||||||| |||  |||||||   ||    
T  4132577 tcttgtgcatgacattgccccaaattttcaccaattggttcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaac---aa 4132673  T
Q  214 caacctccactttgttacaaggttctatacttgatactactctctg 259  Q
    ||| ||| ||||||| || |||||| ||| ||||||||||||||||    
T  4132674 caatctcgactttgtcaccaggttccatatttgatactactctctg 4132719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 259
Target Start/End: Original strand, 4319296 - 4319406
Alignment:
Q  149 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 248  Q
    |||||||||||||| ||||||||||| ||| ||| |||||||||||| |||  |||||||   ||||| |||||| |||| || |||||| ||| ||| |    
T  4319296 tggttcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacgacaacaatctccaccttgtcaccaggttccatatttgtt 4319395  T
Q  249 actactctctg 259  Q
    || ||||||||    
T  4319396 acaactctctg 4319406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 193
Target Start/End: Original strand, 7884147 - 7884193
Alignment:
Q  147 attggttcatcatatacgagataaactgttgttttcttcacaatgaa 193  Q
    |||||||||||||| || ||||||| |||||||||||||||||||||    
T  7884147 attggttcatcatagacaagataaattgttgttttcttcacaatgaa 7884193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 4346666 - 4346621
Alignment:
Q  147 attggttcatcatatacgagataaactgttgttttcttcacaatga 192  Q
    |||||||||||||||| ||||||||||| ||| ||| |||||||||    
T  4346666 attggttcatcatatatgagataaactgctgtcttcgtcacaatga 4346621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 4362855 - 4362810
Alignment:
Q  147 attggttcatcatatacgagataaactgttgttttcttcacaatga 192  Q
    |||||||||||||||| ||||||||||| ||| ||| |||||||||    
T  4362855 attggttcatcatatatgagataaactgctgtcttcgtcacaatga 4362810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 155 - 273
Target Start/End: Original strand, 47985393 - 47985511
Alignment:
Q  155 atcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 254  Q
    ||||||||| |||||||||| | |  |||||||||||||||| || |||||||||  ||| ||||||||||||||||  |||||||||||||||||||||    
T  47985393 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact 47985492  T
Q  255 ctctgtccctcttcatctc 273  Q
    ||||  ||||| |||||||    
T  47985493 ctctccccctcctcatctc 47985511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 155 - 273
Target Start/End: Original strand, 48003967 - 48004085
Alignment:
Q  155 atcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 254  Q
    ||||||||| |||||||||| | |  |||||||||||||||| || |||||||||  ||| ||||||||||||||||  |||||||||||||||||||||    
T  48003967 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact 48004066  T
Q  255 ctctgtccctcttcatctc 273  Q
    ||||  ||||| |||||||    
T  48004067 ctctccccctcctcatctc 48004085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 273
Target Start/End: Original strand, 47994680 - 47994798
Alignment:
Q  155 atcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 254  Q
    ||||||||| |||||||||| | |  |||||||||||||||| || |||||||||  ||| ||||||||||||||||  | |||||||||||||||||||    
T  47994680 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact 47994779  T
Q  255 ctctgtccctcttcatctc 273  Q
    ||||  ||||| |||||||    
T  47994780 ctctccccctcctcatctc 47994798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 273
Target Start/End: Original strand, 48013252 - 48013370
Alignment:
Q  155 atcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 254  Q
    ||||||||| |||||||||| | |  |||||||||||||||| || |||||||||  ||| ||||||||||||||||  | |||||||||||||||||||    
T  48013252 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact 48013351  T
Q  255 ctctgtccctcttcatctc 273  Q
    ||||  ||||| |||||||    
T  48013352 ctctccccctcctcatctc 48013370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 147 - 272
Target Start/End: Original strand, 36212913 - 36213038
Alignment:
Q  147 attggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttg 246  Q
    |||||||||||||| | ||||||||  | ||| |||||||||||||||  ||| |||||||||  ||||||||||| ||| | || ||||||||||||||    
T  36212913 attggttcatcataaatgagataaatcgctgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttg 36213012  T
Q  247 atactactctctgtccctcttcatct 272  Q
    |||||| |||||| ||||| ||||||    
T  36213013 atactaatctctgcccctcctcatct 36213038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 7878 - 7974
Alignment:
Q  156 tcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatacta 252  Q
    |||||||  ||||||| ||||||||  ||| ||||||||||||   ||||||||  |||||||||||||||||| |  ||||||| |||||||||||    
T  7878 tcatatataagataaattgttgtttctttcgcaatgaaaccgtccccaaaaacaacaacaacctccactttgtttccgggttctacacttgatacta 7974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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