View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_230 (Length: 276)
Name: NF9264A_low_230
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_230 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 6 - 268
Target Start/End: Complemental strand, 5690143 - 5689881
Alignment:
| Q |
6 |
ctgaaaagaaaggtgatagatatgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgagga |
105 |
Q |
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| T |
5690143 |
ctgaaaagaaaggtgatagatatgaagcaatctacagtttccattttggtgattatggtcacttagcagttcaaggaccatatttaacctatcctgagga |
5690044 |
T |
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| Q |
106 |
cacttatctagctgtgactggtggttctggaatatttgtaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctataca |
205 |
Q |
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| T |
5690043 |
cacttatctagctgtgactggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctataca |
5689944 |
T |
|
| Q |
206 |
ttttatttgagaggtattaaggatttgccacaagagcttcttggtaagcatgttgagccttct |
268 |
Q |
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| T |
5689943 |
ttttatttgagaggtattaaggatttgccacaagagcttcttggtaaacatgttgagccttct |
5689881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 8 - 265
Target Start/End: Complemental strand, 25914822 - 25914568
Alignment:
| Q |
8 |
gaaaagaaaggtgatagatatgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggaca |
107 |
Q |
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| T |
25914822 |
gaaaagtatggtgacagatatgaagcaatctacagttttcacgttggagactatggtcaaatagctgtgcaaggaccttacctaacctat---gaggaca |
25914726 |
T |
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| Q |
108 |
cttatctagctgtgactggtggttctggaatatttgtaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacatt |
207 |
Q |
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| T |
25914725 |
catatctaactgtgactggtggtactggaatttttgaaggtgttacaggccaagtgaagctcaatcaaattgtttttccatttaagattttctacacatt |
25914626 |
T |
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| Q |
208 |
ttatttgagaggtattaaggatttgccacaagagcttcttggtaagcatgttgagcct |
265 |
Q |
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| T |
25914625 |
ttatttgaagggtattaaggatttgccacaagagcttcttggtaaaccagttgagcct |
25914568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 265
Target Start/End: Original strand, 6792563 - 6792803
Alignment:
| Q |
25 |
atatgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctagctgtgact |
124 |
Q |
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| T |
6792563 |
atatgaagcaatatatagtttttattttggagagtatggtcatatttctgtgcaaggttcttatttaacttatgaggaggatacttatttggctgtgact |
6792662 |
T |
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| Q |
125 |
ggtggttctggaatatttgtaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggtatta |
224 |
Q |
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| T |
6792663 |
ggtggaactggaatatttgaaggtgtttatggtcaagttaagcttcatcaaattgtgtttccatttaagatattttacacattttatcttaagggtatta |
6792762 |
T |
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| Q |
225 |
aggatttgccacaagagcttcttggtaagcatgttgagcct |
265 |
Q |
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| T |
6792763 |
aggatttgccacatgagtttcttgttaatcctattgagcct |
6792803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 237
Target Start/End: Original strand, 6800131 - 6800246
Alignment:
| Q |
122 |
actggtggttctggaatatttgtaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggta |
221 |
Q |
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| T |
6800131 |
actggtggaactggaatatttgaaggtgtttatggtcaagttaagcttcatcaaattgtgtttccatttaagctattttacacattttatcttatgggta |
6800230 |
T |
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| Q |
222 |
ttaaggatttgccaca |
237 |
Q |
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|||||||||||||||| |
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| T |
6800231 |
ttaaggatttgccaca |
6800246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 22227359 - 22227490
Alignment:
| Q |
17 |
ggtgatagatatgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctag |
116 |
Q |
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|||||||||||||||||||| ||||| ||| | |||||||| |||||||| || |||| |||||||| ||| | || || | | ||||| ||||| | |
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| T |
22227359 |
ggtgatagatatgaagcaatttacagcttctactttggagactatggtcatatatcagtacaaggaccttatctcacatacc---aagacacatatcttg |
22227455 |
T |
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| Q |
117 |
ctgtgactggtggttctggaatatttgtaggtgtt |
151 |
Q |
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| T |
22227456 |
ctataacaggtggttctggaatctttgaaggtgtt |
22227490 |
T |
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