View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9264A_low_231 (Length: 276)
Name: NF9264A_low_231
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_231 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 276
Target Start/End: Complemental strand, 6466597 - 6466336
Alignment:
| Q |
15 |
aagagcaaaacaaatgcaaagattccagcttcgcaaacaataatcataagtattagttcataacaatctatattgtattgnnnnnnnnttaccaatcgtg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6466597 |
aagagcaaaacaaatgcaaagattccagcttcgcaaacaataatcataagcattagttcataacaatctatattgtattgaaaaaaaattaccaatcgtg |
6466498 |
T |
|
| Q |
115 |
aaggtttgatttaacatcatacgtccatcttcattgtttcctgaaaataaaaatagtaagaataattgttacaaacataactctgaaatattttgaggtt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6466497 |
aaggtttgatttaacatcatacgtccatcttcattgtttcctgaaaataaaaatagtaagaataattgttacaaacataactctgaaatattttgaggtt |
6466398 |
T |
|
| Q |
215 |
tggagaagaagtattgaaagattatgaaatgtttttaatataaaataagggtcgctaactga |
276 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6466397 |
tggagaaaaagtattgaaagattatgaaatgtttttaatataaaataagggtcgctaactga |
6466336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University