View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_237 (Length: 274)
Name: NF9264A_low_237
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_237 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 6 - 166
Target Start/End: Original strand, 31069237 - 31069397
Alignment:
| Q |
6 |
acaatcacccatcaagatgatttcaccaatatcgattcaagtttcatagaaaacaccgaagacaaaatgaaagaaattgcttcagttcttccaaaaatgg |
105 |
Q |
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| T |
31069237 |
acaaacacccatcaagatgatttcaccaatatcgattcaagtttcatagaaaacaccgaagacaaaatgaaagaaattgcttcagttcttccaaaaatgg |
31069336 |
T |
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| Q |
106 |
tcaaggaatatcacaagactcatctcaacacatttcgttaatataaataagaagataatag |
166 |
Q |
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| T |
31069337 |
tcaaggaatatcacaagattcatctcaacacatttcgttaatataaataagaagataatag |
31069397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 11593109 - 11592997
Alignment:
| Q |
12 |
acccatcaagatgatttcaccaatatcgattcaagtttcatagaaaacaccgaagacaaaatgaaagaaattgcttcagttcttccaaaaat-ggtcaag |
110 |
Q |
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||||||||| | |||| |||||| || ||||| ||||||||||||||||| |||||| ||| |||||| |||||| ||||||||||| || ||||||| |
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| T |
11593109 |
acccatcaacaagattacaccaacatggattctggtttcatagaaaacaccaaagacagaatcaaagaagctgcttctgttcttccaaacatgggtcaag |
11593010 |
T |
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| Q |
111 |
gaatatcacaaga |
123 |
Q |
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| T |
11593009 |
gaatttcacaaga |
11592997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 11645010 - 11645122
Alignment:
| Q |
12 |
acccatcaagatgatttcaccaatatcgattcaagtttcatagaaaacaccgaagacaaaatgaaagaaattgcttcagttcttccaaaaat-ggtcaag |
110 |
Q |
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||||||||| | |||| |||||| || ||||| ||||||||||||||||| |||||| ||| |||||| |||||| ||||||||||| || ||||||| |
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| T |
11645010 |
acccatcaacaagattacaccaacatggattctggtttcatagaaaacaccaaagacagaatcaaagaagctgcttctgttcttccaaacatgggtcaag |
11645109 |
T |
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| Q |
111 |
gaatatcacaaga |
123 |
Q |
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|||| |||||||| |
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| T |
11645110 |
gaatttcacaaga |
11645122 |
T |
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