View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_24 (Length: 444)

Name: NF9264A_low_24
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_24
NF9264A_low_24
[»] chr6 (2 HSPs)
chr6 (8-251)||(34691008-34691251)
chr6 (316-438)||(34690822-34690944)
[»] chr2 (12 HSPs)
chr2 (8-251)||(26988933-26989176)
chr2 (316-438)||(26988746-26988868)
chr2 (372-438)||(27076447-27076513)
chr2 (355-438)||(21432814-21432896)
chr2 (372-428)||(27028074-27028130)
chr2 (148-230)||(27076251-27076333)
chr2 (374-438)||(27099551-27099615)
chr2 (378-436)||(27151628-27151687)
chr2 (116-196)||(27028148-27028237)
chr2 (108-148)||(27076180-27076220)
chr2 (8-65)||(27076099-27076156)
chr2 (8-44)||(21433246-21433282)


Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 34691251 - 34691008
Alignment:
Q  8 gaataatataatgatatctgtcttttagcaaccaaagaacacgaacgaatgtttattctgcaaatttttcagtgtaatcgaaaacaaagaatgcataaat 107  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  34691251 gaataatacaatgatatctgtcttttagcaaccaaagaacacgaacgaatgtttattctgcaaatttttcagtgtaatcgaaaacaaagaatgcataaag 34691152  T
Q  108 cttgttgtaagctttccaaaagcatttaacagacacaactgcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaagatgaaaaaac 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  34691151 cttgttgtaagctttccaaaagcatttaacagacacaactgcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaagatgaaaaaaa 34691052  T
Q  208 taataagatcgaggtctcatgctctatgacagtaagttacaatg 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  34691051 taataagatcgaggtctcatgctctatgacagtaagttacaatg 34691008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 316 - 438
Target Start/End: Complemental strand, 34690944 - 34690822
Alignment:
Q  316 ttctaataaatactaataatgacaattacgaaaagaaaaggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttctt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34690944 ttctaataaatactaataatgacaattacgaaaagaaaaggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttctt 34690845  T
Q  416 ctgggctcaaacgatgaagggaa 438  Q
    |||||||||||||||||||||||    
T  34690844 ctgggctcaaacgatgaagggaa 34690822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 26989176 - 26988933
Alignment:
Q  8 gaataatataatgatatctgtcttttagcaaccaaagaacacgaacgaatgtttattctgcaaatttttcagtgtaatcgaaaacaaagaatgcataaat 107  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26989176 gaataatacaatgatatctgtcttttagcaaccaaagaacacgaacgaatgtttattctgcaaatttttcagtgtaatcgaaaacaaagaatgcataaag 26989077  T
Q  108 cttgttgtaagctttccaaaagcatttaacagacacaactgcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaagatgaaaaaac 207  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26989076 cttgttgcaaactttccaaaagcatttaacagacacaactgcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaagatgaaaaaaa 26988977  T
Q  208 taataagatcgaggtctcatgctctatgacagtaagttacaatg 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  26988976 taataagatcgaggtctcatgctctatgacagtaagttacaatg 26988933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 316 - 438
Target Start/End: Complemental strand, 26988868 - 26988746
Alignment:
Q  316 ttctaataaatactaataatgacaattacgaaaagaaaaggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttctt 415  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26988868 ttctaataaatactaattatgacaattacgaaaagaaaaggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttctt 26988769  T
Q  416 ctgggctcaaacgatgaagggaa 438  Q
    |||||||||||||||||||||||    
T  26988768 ctgggctcaaacgatgaagggaa 26988746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 372 - 438
Target Start/End: Original strand, 27076447 - 27076513
Alignment:
Q  372 attaccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaa 438  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27076447 attaccttctagagaatctgtatgagtttttaaatgcatttcttctgggctcaaacgatgaagggaa 27076513  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 355 - 438
Target Start/End: Complemental strand, 21432896 - 21432814
Alignment:
Q  355 ggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaa 438  Q
    ||||||| |||||||| || |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  21432896 ggtgcattggttggcacat-accttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacgatgaagggaa 21432814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 372 - 428
Target Start/End: Complemental strand, 27028130 - 27028074
Alignment:
Q  372 attaccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacg 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27028130 attaccttctagagaatctgtatgggtttttaaatgcatttcttctgagctcaaacg 27028074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 27076251 - 27076333
Alignment:
Q  148 gcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaagatgaaaaaactaataagatcgaggtctcatgct 230  Q
    |||||||||||||||||||||||||| || ||| |  |||||||||||||||||||||| |||||||||  ||||||| ||||    
T  27076251 gcaaaccaagaaagctgtataatgcctgcgtttcacgctttcagcaaaagatgaaaaaaataataagataaaggtctcttgct 27076333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 374 - 438
Target Start/End: Original strand, 27099551 - 27099615
Alignment:
Q  374 taccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaa 438  Q
    ||||||||||||||||||||| |||||| || |||||||||| |||| ||||| |||||||||||    
T  27099551 taccttctagagaatctgtataggttttcaattgcatttcttttgggttcaaaggatgaagggaa 27099615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 436
Target Start/End: Complemental strand, 27151687 - 27151628
Alignment:
Q  378 ttctagagaatctgtatgggtttttaaatgcatttcttct-gggctcaaacgatgaaggg 436  Q
    ||||||||||||||||| | |||||||||||||||||||| ||||||||| |||||||||    
T  27151687 ttctagagaatctgtatagatttttaaatgcatttcttctggggctcaaatgatgaaggg 27151628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 27028237 - 27028148
Alignment:
Q  116 aagctttccaaaagcatttaacagacacaact---------gcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaa 196  Q
    ||||||||||||||||||||||| ||| ||||         ||||||||||||||||||||||||||||||||| |  ||||||||||||    
T  27028237 aagctttccaaaagcatttaacaaacataactaagacactagcaaaccaagaaagctgtataatgccagcatttcacgctttcagcaaaa 27028148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 27076180 - 27076220
Alignment:
Q  108 cttgttgtaagctttccaaaagcatttaacagacacaactg 148  Q
    ||||||| ||||||||||||||||||||||| |||||||||    
T  27076180 cttgttgcaagctttccaaaagcatttaacaaacacaactg 27076220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 27076099 - 27076156
Alignment:
Q  8 gaataatataatgatatctgtcttttagcaaccaaagaacacgaacgaatgtttattc 65  Q
    |||||||  |||||||| |||||||||||||||||| |||| |||| | |||||||||    
T  27076099 gaataattcaatgatatatgtcttttagcaaccaaataacatgaacaactgtttattc 27076156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 21433282 - 21433246
Alignment:
Q  8 gaataatataatgatatctgtcttttagcaaccaaag 44  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  21433282 gaataatacaatgatatctgtcttttagcaacaaaag 21433246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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