View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_243 (Length: 271)

Name: NF9264A_low_243
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_243
NF9264A_low_243
[»] chr6 (12 HSPs)
chr6 (48-181)||(20584758-20584891)
chr6 (104-181)||(34731247-34731323)
chr6 (104-181)||(34607773-34607849)
chr6 (101-181)||(27793679-27793759)
chr6 (192-241)||(20584692-20584741)
chr6 (102-181)||(25073320-25073398)
chr6 (49-83)||(559097-559131)
chr6 (49-83)||(2443210-2443244)
chr6 (49-83)||(27719938-27719972)
chr6 (53-83)||(34904697-34904727)
chr6 (51-83)||(12432023-12432055)
chr6 (50-82)||(22757038-22757070)
[»] chr1 (17 HSPs)
chr1 (102-181)||(17556596-17556674)
chr1 (52-83)||(23710783-23710814)
chr1 (102-181)||(49103026-49103104)
chr1 (53-83)||(1507103-1507133)
chr1 (49-83)||(13120937-13120971)
chr1 (49-83)||(31149786-31149820)
chr1 (107-181)||(35619583-35619656)
chr1 (49-83)||(39827353-39827387)
chr1 (49-83)||(41150564-41150598)
chr1 (49-83)||(42063608-42063642)
chr1 (50-83)||(29586947-29586980)
chr1 (52-80)||(7780488-7780516)
chr1 (51-83)||(19898240-19898272)
chr1 (51-83)||(28867853-28867885)
chr1 (51-83)||(29379791-29379823)
chr1 (51-83)||(29703525-29703557)
chr1 (102-181)||(41432839-41432916)
[»] chr3 (17 HSPs)
chr3 (113-181)||(3707034-3707101)
chr3 (113-181)||(49855893-49855960)
chr3 (118-180)||(7302016-7302077)
chr3 (49-83)||(54541384-54541418)
chr3 (50-82)||(44946521-44946553)
chr3 (102-176)||(32858764-32858837)
chr3 (49-83)||(40479402-40479436)
chr3 (50-83)||(37528082-37528115)
chr3 (50-83)||(37713313-37713346)
chr3 (50-83)||(52858680-52858713)
chr3 (102-143)||(53888453-53888494)
chr3 (51-83)||(2852681-2852713)
chr3 (51-83)||(8873614-8873646)
chr3 (55-83)||(24535950-24535978)
chr3 (51-83)||(29080617-29080649)
chr3 (102-142)||(35283054-35283094)
chr3 (51-83)||(54671568-54671600)
[»] chr8 (9 HSPs)
chr8 (103-170)||(5858338-5858404)
chr8 (107-181)||(5935119-5935192)
chr8 (103-181)||(31305849-31305926)
chr8 (49-83)||(31687407-31687441)
chr8 (50-83)||(8435809-8435842)
chr8 (112-180)||(7080366-7080434)
chr8 (51-83)||(17116302-17116334)
chr8 (55-83)||(30338320-30338348)
chr8 (51-83)||(41693370-41693402)
[»] chr4 (15 HSPs)
chr4 (102-181)||(48620208-48620286)
chr4 (102-176)||(52636694-52636768)
chr4 (49-83)||(3010455-3010489)
chr4 (49-83)||(4392064-4392098)
chr4 (49-83)||(7707154-7707188)
chr4 (49-83)||(27184966-27185000)
chr4 (102-181)||(42650568-42650643)
chr4 (49-83)||(43225059-43225093)
chr4 (102-135)||(23902504-23902537)
chr4 (51-83)||(8942656-8942688)
chr4 (51-83)||(22037693-22037725)
chr4 (50-82)||(22431571-22431603)
chr4 (52-80)||(40120673-40120701)
chr4 (113-177)||(53299885-53299948)
chr4 (51-83)||(56373225-56373257)
[»] chr2 (14 HSPs)
chr2 (50-83)||(5519356-5519389)
chr2 (51-83)||(43506896-43506928)
chr2 (49-83)||(2545748-2545782)
chr2 (49-83)||(3378139-3378173)
chr2 (49-83)||(24401444-24401478)
chr2 (107-181)||(27987595-27987667)
chr2 (107-181)||(28074128-28074200)
chr2 (49-83)||(41323567-41323601)
chr2 (50-83)||(2265484-2265517)
chr2 (50-83)||(8705834-8705867)
chr2 (112-177)||(41503104-41503168)
chr2 (51-83)||(9263665-9263697)
chr2 (51-83)||(21866025-21866057)
chr2 (52-80)||(39168530-39168558)
[»] scaffold0036 (1 HSPs)
scaffold0036 (113-181)||(82724-82792)
[»] scaffold1526 (1 HSPs)
scaffold1526 (49-83)||(1360-1394)
[»] scaffold0349 (1 HSPs)
scaffold0349 (49-83)||(9360-9394)
[»] scaffold0173 (1 HSPs)
scaffold0173 (53-83)||(22220-22250)
[»] chr7 (7 HSPs)
chr7 (49-83)||(9488168-9488202)
chr7 (53-83)||(33027616-33027646)
chr7 (49-83)||(36436891-36436925)
chr7 (102-181)||(7391482-7391560)
chr7 (51-83)||(19831448-19831480)
chr7 (112-176)||(33187929-33187992)
chr7 (102-178)||(38987327-38987403)
[»] chr5 (12 HSPs)
chr5 (49-83)||(15531218-15531252)
chr5 (49-83)||(19526511-19526545)
chr5 (49-83)||(36686605-36686639)
chr5 (50-83)||(11061817-11061850)
chr5 (49-82)||(19348454-19348487)
chr5 (50-83)||(39276185-39276218)
chr5 (50-82)||(3671075-3671107)
chr5 (51-83)||(5997246-5997278)
chr5 (51-83)||(8023284-8023316)
chr5 (51-83)||(13227901-13227933)
chr5 (50-82)||(30773508-30773540)
chr5 (51-83)||(32383617-32383649)
[»] scaffold0116 (1 HSPs)
scaffold0116 (50-83)||(25680-25713)
[»] scaffold0016 (1 HSPs)
scaffold0016 (50-83)||(92840-92873)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 48 - 181
Target Start/End: Complemental strand, 20584891 - 20584758
Alignment:
Q  48 ctttaggctctgtttggtaaaaataacggatagctggtgattgatagctgatagggagggtttaatattttgaagaaaaataaactccccaaagccttct 147  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||    
T  20584891 ctttaggctctgtttggtaaaaataatggatagctggtgattgatagctgataggaagggttttatattttgaagaaaaataaactccccaaagcattct 20584792  T
Q  148 tctttcaatgtcatctatttctttcacttactcc 181  Q
    ||||||||||||||||||||||||||||||||||    
T  20584791 tctttcaatgtcatctatttctttcacttactcc 20584758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 34731247 - 34731323
Alignment:
Q  104 agggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 181  Q
    ||||||| ||||||||||||||||||| |||||||||| || || ||||||||||| |||||||||| ||||||||||    
T  34731247 agggtttcatattttgaagaaaaataagctccccaaag-ctcctcctttcaatgtcttctatttcttacacttactcc 34731323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 34607773 - 34607849
Alignment:
Q  104 agggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 181  Q
    ||||||| ||||||||||||||||||| ||||||| || || || ||||||||||| |||||||||| |||| |||||    
T  34607773 agggtttcatattttgaagaaaaataagctccccagag-ctcctcctttcaatgtcttctatttcttacactcactcc 34607849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 27793679 - 27793759
Alignment:
Q  101 gggagggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 181  Q
    |||||||||| ||||||||||||||||||||| | ||||||| || | ||| ||||||| | |||||||| |||| |||||    
T  27793679 gggagggttttatattttgaagaaaaataaaccctccaaagcattttccttccaatgtcctttatttcttccactgactcc 27793759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 20584741 - 20584692
Alignment:
Q  192 ctcttccaaactctccctttctttctcatccaaactcaaaaacaaaacct 241  Q
    |||||||||||||||||||||||||| ||||||||| | | |||||||||    
T  20584741 ctcttccaaactctccctttctttcttatccaaactgagatacaaaacct 20584692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 25073320 - 25073398
Alignment:
Q  102 ggagggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 181  Q
    ||||||||| ||||||||||||||||||||| ||||||| ||  || ||| ||||||  |||||||||| || |||||||    
T  25073320 ggagggttttatattttgaagaaaaataaac-ccccaaaaccccctccttccaatgttctctatttcttccatttactcc 25073398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 559131 - 559097
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  559131 tttaggctctgtttggtaaaaatagcggatagctg 559097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 2443244 - 2443210
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  2443244 tttaggctctgtttggtaaaaatagcggatagctg 2443210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 27719938 - 27719972
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  27719938 tttaggctctgtttggtaaaaatagcggatagctg 27719972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 83
Target Start/End: Complemental strand, 34904727 - 34904697
Alignment:
Q  53 ggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||||||||||    
T  34904727 ggctctgtttggtaaaaataacggatagctg 34904697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 12432023 - 12432055
Alignment:
Q  51 taggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||| ||||||||||    
T  12432023 taggctctgtttggtaaaaatagcggatagctg 12432055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 22757070 - 22757038
Alignment:
Q  50 ttaggctctgtttggtaaaaataacggatagct 82  Q
    ||||||||||||||||||||||| |||||||||    
T  22757070 ttaggctctgtttggtaaaaatagcggatagct 22757038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 17556674 - 17556596
Alignment:
Q  102 ggagggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 181  Q
    ||||||||| ||||||||||||||||||| | |||||||||| ||| ||  ||||||| |||||||||| ||||||||||    
T  17556674 ggagggttttatattttgaagaaaaataagccccccaaagcc-tctcctcccaatgtcctctatttcttccacttactcc 17556596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 83
Target Start/End: Complemental strand, 23710814 - 23710783
Alignment:
Q  52 aggctctgtttggtaaaaataacggatagctg 83  Q
    ||||||||||||||||||||||||||||||||    
T  23710814 aggctctgtttggtaaaaataacggatagctg 23710783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 49103026 - 49103104
Alignment:
Q  102 ggagggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 181  Q
    ||||||||| || |||||||||||||||||| | ||||||||  || ||  ||||||| |||||||||| ||||||||||    
T  49103026 ggagggttttatgttttgaagaaaaataaaccctccaaagcc-cctcctcccaatgtcctctatttcttccacttactcc 49103104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 83
Target Start/End: Original strand, 1507103 - 1507133
Alignment:
Q  53 ggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||||||||||    
T  1507103 ggctctgtttggtaaaaataacggatagctg 1507133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 13120937 - 13120971
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  13120937 tttaggctctgtttggtaaaaatagcggatagctg 13120971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 31149786 - 31149820
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  31149786 tttaggctctgtttggtaaaaatagcggatagctg 31149820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 35619583 - 35619656
Alignment:
Q  107 gtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 181  Q
    |||| ||||||||||||||||||| |  |||||||||  || ||| |||| |||| |||||||||||||||||||    
T  35619583 gttttatattttgaagaaaaataagcctcccaaagcc-cctccttccaatatcatttatttctttcacttactcc 35619656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 39827387 - 39827353
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  39827387 tttaggctctgtttggtaaaaatagcggatagctg 39827353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 41150564 - 41150598
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  41150564 tttaggctctgtttggtaaaaatagcggatagctg 41150598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 42063608 - 42063642
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  42063608 tttaggctctgtttggtaaaaatagcggatagctg 42063642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 29586980 - 29586947
Alignment:
Q  50 ttaggctctgtttggtaaaaataacggatagctg 83  Q
    ||||||||||||||||||||||| ||||||||||    
T  29586980 ttaggctctgtttggtaaaaatagcggatagctg 29586947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 80
Target Start/End: Original strand, 7780488 - 7780516
Alignment:
Q  52 aggctctgtttggtaaaaataacggatag 80  Q
    |||||||||||||||||||||||||||||    
T  7780488 aggctctgtttggtaaaaataacggatag 7780516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 19898240 - 19898272
Alignment:
Q  51 taggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||| ||||||||||    
T  19898240 taggctctgtttggtaaaaatagcggatagctg 19898272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 28867853 - 28867885
Alignment:
Q  51 taggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||| ||||||||||    
T  28867853 taggctctgtttggtaaaaatagcggatagctg 28867885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 29379823 - 29379791
Alignment:
Q  51 taggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||| ||||||||||    
T  29379823 taggctctgtttggtaaaaatagcggatagctg 29379791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 29703525 - 29703557
Alignment:
Q  51 taggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||| ||||||||||    
T  29703525 taggctctgtttggtaaaaatagcggatagctg 29703557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 41432839 - 41432916
Alignment:
Q  102 ggagggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 181  Q
    ||||||||| ||||| ||||||||||| ||  |||||||||||||  |  |||||||||| |||||||| ||||| ||||    
T  41432839 ggagggttttatattatgaagaaaaatgaaacccccaaagccttc--ccctcaatgtcatatatttcttccacttgctcc 41432916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 3707101 - 3707034
Alignment:
Q  113 tattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 181  Q
    |||| ||||||||||| ||| |||||||||||||| || ||||||||||||||||||| ||||| ||||    
T  3707101 tattatgaagaaaaatgaac-ccccaaagccttctcctctcaatgtcatctatttcttccacttgctcc 3707034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 49855893 - 49855960
Alignment:
Q  113 tattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 181  Q
    |||| ||||||||||| ||| ||||||| ||||| ||| ||||||||||||||||||||||||| ||||    
T  49855893 tattatgaagaaaaatgaac-ccccaaaaccttcctctctcaatgtcatctatttctttcacttgctcc 49855960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 7302077 - 7302016
Alignment:
Q  118 tgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactc 180  Q
    ||||||||||| || ||||||||||||| |||| ||||||| |||||||||||| ||||||||    
T  7302077 tgaagaaaaatgaa-tccccaaagccttattctctcaatgttatctatttcttttacttactc 7302016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 54541384 - 54541418
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||||||||||||||    
T  54541384 tttaggctctgtttggtaaaaataacggatagctg 54541418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 44946521 - 44946553
Alignment:
Q  50 ttaggctctgtttggtaaaaataacggatagct 82  Q
    |||||||||||||||||||||||||||||||||    
T  44946521 ttaggctctgtttggtaaaaataacggatagct 44946553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 32858837 - 32858764
Alignment:
Q  102 ggagggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcactt 176  Q
    ||||| ||| ||||| ||||||||||| ||| ||||||||||||   || ||||||||||||||||||| |||||    
T  32858837 ggaggattttatattatgaagaaaaatgaac-ccccaaagcctttccctctcaatgtcatctatttcttccactt 32858764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 40479402 - 40479436
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  40479402 tttaggctctgtttggtaaaaatagcggatagctg 40479436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 37528082 - 37528115
Alignment:
Q  50 ttaggctctgtttggtaaaaataacggatagctg 83  Q
    ||||||||||||||||||||||| ||||||||||    
T  37528082 ttaggctctgtttggtaaaaatagcggatagctg 37528115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 37713313 - 37713346
Alignment:
Q  50 ttaggctctgtttggtaaaaataacggatagctg 83  Q
    ||||||||||||||||||||||| ||||||||||    
T  37713313 ttaggctctgtttggtaaaaatagcggatagctg 37713346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 52858713 - 52858680
Alignment:
Q  50 ttaggctctgtttggtaaaaataacggatagctg 83  Q
    ||||||||||||||||||||||| ||||||||||    
T  52858713 ttaggctctgtttggtaaaaatagcggatagctg 52858680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 53888494 - 53888453
Alignment:
Q  102 ggagggtttaatattttgaagaaaaataaactccccaaagcc 143  Q
    ||||||||| ||||||||||||||||||| | ||||||||||    
T  53888494 ggagggttttatattttgaagaaaaataagccccccaaagcc 53888453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 2852713 - 2852681
Alignment:
Q  51 taggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||| ||||||||||    
T  2852713 taggctctgtttggtaaaaatagcggatagctg 2852681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 8873646 - 8873614
Alignment:
Q  51 taggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||| ||||||||||    
T  8873646 taggctctgtttggtaaaaatagcggatagctg 8873614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 83
Target Start/End: Original strand, 24535950 - 24535978
Alignment:
Q  55 ctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||||||||    
T  24535950 ctctgtttggtaaaaataacggatagctg 24535978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 29080617 - 29080649
Alignment:
Q  51 taggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||| ||||||||||    
T  29080617 taggctctgtttggtaaaaatagcggatagctg 29080649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 35283094 - 35283054
Alignment:
Q  102 ggagggtttaatattttgaagaaaaataaactccccaaagc 142  Q
    ||||||||| ||||||||||||||||| ||| |||||||||    
T  35283094 ggagggttttatattttgaagaaaaattaaccccccaaagc 35283054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 54671568 - 54671600
Alignment:
Q  51 taggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||| ||||||||||    
T  54671568 taggctctgtttggtaaaaatagcggatagctg 54671600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 5858338 - 5858404
Alignment:
Q  103 gagggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctt 170  Q
    |||||||| |||||||||||||||||| || |||||||||| || || | ||||||||||||||||||    
T  5858338 gagggttttatattttgaagaaaaatataccccccaaagccctc-tcctccaatgtcatctatttctt 5858404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 5935192 - 5935119
Alignment:
Q  107 gtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 181  Q
    |||| ||||||||||||||| ||| | | ||||| ||| || |||||||||||||||||||||| || |||||||    
T  5935192 gttttatattttgaagaaaattaagccctccaaaacct-ctcctttcaatgtcatctatttcttccatttactcc 5935119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 31305849 - 31305926
Alignment:
Q  103 gagggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 181  Q
    |||||||| | ||||||||||||||||| |  ||||||||| | || || | |||||||||||||||| ||||||||||    
T  31305849 gagggttttacattttgaagaaaaataagcctcccaaagccctttt-ttcctatgtcatctatttcttccacttactcc 31305926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 31687407 - 31687441
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  31687407 tttaggctctgtttggtaaaaatagcggatagctg 31687441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 8435809 - 8435842
Alignment:
Q  50 ttaggctctgtttggtaaaaataacggatagctg 83  Q
    ||||||||||||||||||||||| ||||||||||    
T  8435809 ttaggctctgtttggtaaaaatagcggatagctg 8435842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 7080366 - 7080434
Alignment:
Q  112 atattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactc 180  Q
    ||||||||||| ||||||||| |||||||||| ||| ||  |||| |||  |||||||| |||||||||    
T  7080366 atattttgaagcaaaataaaccccccaaagccctctcctcccaatatcaaatatttcttccacttactc 7080434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 17116334 - 17116302
Alignment:
Q  51 taggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||| ||||||||||    
T  17116334 taggctctgtttggtaaaaatagcggatagctg 17116302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 83
Target Start/End: Complemental strand, 30338348 - 30338320
Alignment:
Q  55 ctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||||||||    
T  30338348 ctctgtttggtaaaaataacggatagctg 30338320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 41693370 - 41693402
Alignment:
Q  51 taggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||| ||||||||||    
T  41693370 taggctctgtttggtaaaaatagcggatagctg 41693402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 48620286 - 48620208
Alignment:
Q  102 ggagggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 181  Q
    ||||||||| ||||||||||| ||||||| | ||||||||||  || ||| ||||||| |||||||||| ||||||||||    
T  48620286 ggagggttttatattttgaagtaaaataagccccccaaagcc-cctccttccaatgtcctctatttcttccacttactcc 48620208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 52636768 - 52636694
Alignment:
Q  102 ggagggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcactt 176  Q
    ||||||||| ||||| ||||||||||| ||| |||||||||| || |||| ||||||  |||||||||| |||||    
T  52636768 ggagggttttatattatgaagaaaaattaaccccccaaagccctcatcttccaatgtactctatttcttccactt 52636694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 3010489 - 3010455
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  3010489 tttaggctctgtttggtaaaaatagcggatagctg 3010455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 4392064 - 4392098
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  4392064 tttaggctctgtttggtaaaaatagcggatagctg 4392098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 7707188 - 7707154
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  7707188 tttaggctctgtttggtaaaaatagcggatagctg 7707154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 27184966 - 27185000
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  27184966 tttaggctctgtttggtaaaaatagcggatagctg 27185000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 42650643 - 42650568
Alignment:
Q  102 ggagggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 181  Q
    ||||||||| ||||||||||||||||||||  ||||||||||     || ||| |||| |||||||||| ||||||||||    
T  42650643 ggagggttttatattttgaagaaaaataaaacccccaaagcc----cctctcagtgtcctctatttcttccacttactcc 42650568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 43225059 - 43225093
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  43225059 tttaggctctgtttggtaaaaatagcggatagctg 43225093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 23902504 - 23902537
Alignment:
Q  102 ggagggtttaatattttgaagaaaaataaactcc 135  Q
    ||||||||| ||||||||||||||||||||||||    
T  23902504 ggagggtttcatattttgaagaaaaataaactcc 23902537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 8942688 - 8942656
Alignment:
Q  51 taggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||| ||||||||||    
T  8942688 taggctctgtttggtaaaaatagcggatagctg 8942656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 22037693 - 22037725
Alignment:
Q  51 taggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||| ||||||||||    
T  22037693 taggctctgtttggtaaaaatagcggatagctg 22037725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 22431603 - 22431571
Alignment:
Q  50 ttaggctctgtttggtaaaaataacggatagct 82  Q
    ||||||||||||||||||||||| |||||||||    
T  22431603 ttaggctctgtttggtaaaaatagcggatagct 22431571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 40120701 - 40120673
Alignment:
Q  52 aggctctgtttggtaaaaataacggatag 80  Q
    |||||||||||||||||||||||||||||    
T  40120701 aggctctgtttggtaaaaataacggatag 40120673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 53299948 - 53299885
Alignment:
Q  113 tattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcactta 177  Q
    |||| ||||||||||||||| | ||||| | |||| || ||||||||||||||||||| ||||||    
T  53299948 tattatgaagaaaaataaac-ctccaaaacattctcctctcaatgtcatctatttcttccactta 53299885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 56373257 - 56373225
Alignment:
Q  51 taggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||| ||||||||||    
T  56373257 taggctctgtttggtaaaaatagcggatagctg 56373225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 5519356 - 5519389
Alignment:
Q  50 ttaggctctgtttggtaaaaataacggatagctg 83  Q
    ||||||||||||||||||||||||||||||||||    
T  5519356 ttaggctctgtttggtaaaaataacggatagctg 5519389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 43506896 - 43506928
Alignment:
Q  51 taggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||||||||||||    
T  43506896 taggctctgtttggtaaaaataacggatagctg 43506928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 2545748 - 2545782
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  2545748 tttaggctctgtttggtaaaaatagcggatagctg 2545782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 3378173 - 3378139
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  3378173 tttaggctctgtttggtaaaaatagcggatagctg 3378139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 24401444 - 24401478
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  24401444 tttaggctctgtttggtaaaaatagcggatagctg 24401478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 27987667 - 27987595
Alignment:
Q  107 gtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 181  Q
    |||| ||||||||||||||||||| | ||||||||||  || ||| ||||||| | |||||||||||||||||||    
T  27987667 gttttatattttgaagaaaaataagc-ccccaaagccc-ctccttccaatgtcctatatttctttcacttactcc 27987595  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 28074200 - 28074128
Alignment:
Q  107 gtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 181  Q
    |||| ||||||||||||||||||| | ||||||||||  || ||| ||||||| | |||||||||||||||||||    
T  28074200 gttttatattttgaagaaaaataagc-ccccaaagccc-ctccttccaatgtcctatatttctttcacttactcc 28074128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 41323601 - 41323567
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  41323601 tttaggctctgtttggtaaaaatagcggatagctg 41323567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 2265484 - 2265517
Alignment:
Q  50 ttaggctctgtttggtaaaaataacggatagctg 83  Q
    ||||||||||||||||||||||| ||||||||||    
T  2265484 ttaggctctgtttggtaaaaatagcggatagctg 2265517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 8705834 - 8705867
Alignment:
Q  50 ttaggctctgtttggtaaaaataacggatagctg 83  Q
    ||||||||||||||||||||||| ||||||||||    
T  8705834 ttaggctctgtttggtaaaaatagcggatagctg 8705867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 41503168 - 41503104
Alignment:
Q  112 atattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcactta 177  Q
    ||||| ||||||||||| ||| | |||||||  || |||||||||||||| |||||||||||||||    
T  41503168 atattatgaagaaaaatgaac-ctccaaagctctcatctttcaatgtcatttatttctttcactta 41503104  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 9263665 - 9263697
Alignment:
Q  51 taggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||| ||||||||||    
T  9263665 taggctctgtttggtaaaaatagcggatagctg 9263697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 21866057 - 21866025
Alignment:
Q  51 taggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||| ||||||||||    
T  21866057 taggctctgtttggtaaaaatagcggatagctg 21866025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 39168558 - 39168530
Alignment:
Q  52 aggctctgtttggtaaaaataacggatag 80  Q
    |||||||||||||||||||||||||||||    
T  39168558 aggctctgtttggtaaaaataacggatag 39168530  T

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Target: scaffold0036 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 82792 - 82724
Alignment:
Q  113 tattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttactcc 181  Q
    |||| ||||||||||||||| ||| |||||| | |||| |||| |||||||||||||| ||||| ||||    
T  82792 tattatgaagaaaaataaacccccgaaagcccttttctctcaaagtcatctatttcttccacttgctcc 82724  T

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Target: scaffold1526 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 1360 - 1394
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  1360 tttaggctctgtttggtaaaaatagcggatagctg 1394  T

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Target: scaffold0349 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 9360 - 9394
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  9360 tttaggctctgtttggtaaaaatagcggatagctg 9394  T

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Target: scaffold0173 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 83
Target Start/End: Original strand, 22220 - 22250
Alignment:
Q  53 ggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||||||||||    
T  22220 ggctctgtttggtaaaaataacggatagctg 22250  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 9488202 - 9488168
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  9488202 tttaggctctgtttggtaaaaatagcggatagctg 9488168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 83
Target Start/End: Complemental strand, 33027646 - 33027616
Alignment:
Q  53 ggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||||||||||    
T  33027646 ggctctgtttggtaaaaataacggatagctg 33027616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 36436925 - 36436891
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  36436925 tttaggctctgtttggtaaaaatagcggatagctg 36436891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 7391482 - 7391560
Alignment:
Q  102 ggagggtttaatattttgaagaaaaataaactccccaaa-gccttcttctttcaatgtcatctatttctttcacttactcc 181  Q
    ||||||||| ||||||||||||||||||| | |||||||  |||||  || |||||||| |||||||||| ||| ||||||    
T  7391482 ggagggttttatattttgaagaaaaataagccccccaaattccttc--ctctcaatgtcttctatttcttccacctactcc 7391560  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 19831448 - 19831480
Alignment:
Q  51 taggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||| ||||||||||    
T  19831448 taggctctgtttggtaaaaatagcggatagctg 19831480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 33187929 - 33187992
Alignment:
Q  112 atattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcactt 176  Q
    |||||||||||||||| || | |||||||||| ||| ||| ||||||| ||||||| ||||||||    
T  33187929 atattttgaagaaaaacaagccccccaaagcc-tctccttccaatgtcttctatttttttcactt 33187992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 38987403 - 38987327
Alignment:
Q  102 ggagggtttaatattttgaagaaaaataaactccccaaagccttcttctttcaatgtcatctatttctttcacttac 178  Q
    |||| |||| ||||||||||||||||||||||  |||||| | | |  || ||||||| |||||||||| |||||||    
T  38987403 ggagagttttatattttgaagaaaaataaactttccaaagacctttatttccaatgtcctctatttcttccacttac 38987327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 15531252 - 15531218
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  15531252 tttaggctctgtttggtaaaaatagcggatagctg 15531218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 19526545 - 19526511
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  19526545 tttaggctctgtttggtaaaaatagcggatagctg 19526511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 36686639 - 36686605
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||||| ||||||||||    
T  36686639 tttaggctctgtttggtaaaaatagcggatagctg 36686605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 11061817 - 11061850
Alignment:
Q  50 ttaggctctgtttggtaaaaataacggatagctg 83  Q
    ||||||||||||||||||||||| ||||||||||    
T  11061817 ttaggctctgtttggtaaaaatagcggatagctg 11061850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 19348487 - 19348454
Alignment:
Q  49 tttaggctctgtttggtaaaaataacggatagct 82  Q
    |||||||||||||||||||||||| |||||||||    
T  19348487 tttaggctctgtttggtaaaaatagcggatagct 19348454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 39276218 - 39276185
Alignment:
Q  50 ttaggctctgtttggtaaaaataacggatagctg 83  Q
    ||||||||||||||||||||||| ||||||||||    
T  39276218 ttaggctctgtttggtaaaaatagcggatagctg 39276185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 3671107 - 3671075
Alignment:
Q  50 ttaggctctgtttggtaaaaataacggatagct 82  Q
    ||||||||||||||||||||||| |||||||||    
T  3671107 ttaggctctgtttggtaaaaatagcggatagct 3671075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 5997246 - 5997278
Alignment:
Q  51 taggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||| ||||||||||    
T  5997246 taggctctgtttggtaaaaatagcggatagctg 5997278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 8023284 - 8023316
Alignment:
Q  51 taggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||| ||||||||||    
T  8023284 taggctctgtttggtaaaaatagcggatagctg 8023316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 13227901 - 13227933
Alignment:
Q  51 taggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||| ||||||||||    
T  13227901 taggctctgtttggtaaaaatagcggatagctg 13227933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 30773508 - 30773540
Alignment:
Q  50 ttaggctctgtttggtaaaaataacggatagct 82  Q
    ||||||||||||||||||||||| |||||||||    
T  30773508 ttaggctctgtttggtaaaaatagcggatagct 30773540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 32383649 - 32383617
Alignment:
Q  51 taggctctgtttggtaaaaataacggatagctg 83  Q
    |||||||||||||||||||||| ||||||||||    
T  32383649 taggctctgtttggtaaaaatagcggatagctg 32383617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 25713 - 25680
Alignment:
Q  50 ttaggctctgtttggtaaaaataacggatagctg 83  Q
    ||||||||||||||||||||||| ||||||||||    
T  25713 ttaggctctgtttggtaaaaatagcggatagctg 25680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 92840 - 92873
Alignment:
Q  50 ttaggctctgtttggtaaaaataacggatagctg 83  Q
    ||||||||||||||||||||||| ||||||||||    
T  92840 ttaggctctgtttggtaaaaatagcggatagctg 92873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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