View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_249 (Length: 268)

Name: NF9264A_low_249
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_249
NF9264A_low_249
[»] chr2 (4 HSPs)
chr2 (30-208)||(38251820-38251998)
chr2 (30-208)||(43157544-43157722)
chr2 (130-262)||(38251996-38252129)
chr2 (130-262)||(43157413-43157546)
[»] chr1 (5 HSPs)
chr1 (30-208)||(11474968-11475146)
chr1 (30-208)||(11503008-11503186)
chr1 (130-262)||(11474837-11474970)
chr1 (130-262)||(11502877-11503010)
chr1 (164-262)||(28245195-28245293)
[»] chr7 (1 HSPs)
chr7 (164-262)||(22490436-22490534)
[»] chr6 (3 HSPs)
chr6 (164-262)||(19306850-19306948)
chr6 (164-262)||(10123422-10123520)
chr6 (97-153)||(18330745-18330801)
[»] chr5 (1 HSPs)
chr5 (164-260)||(25382894-25382990)
[»] chr4 (1 HSPs)
chr4 (164-260)||(48795473-48795569)


Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 30 - 208
Target Start/End: Original strand, 38251820 - 38251998
Alignment:
Q  30 caccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38251820 caccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatc 38251919  T
Q  130 aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataacacaattaag 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38251920 aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataacacaattaag 38251998  T

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Target: chr2; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 30 - 208
Target Start/End: Complemental strand, 43157722 - 43157544
Alignment:
Q  30 caccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43157722 caccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatc 43157623  T
Q  130 aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataacacaattaag 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43157622 aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataacacaattaag 43157544  T

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Target: chr2; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 130 - 262
Target Start/End: Original strand, 38251996 - 38252129
Alignment:
Q  130 aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaaaatattgtatatt 228  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38251996 aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaaaatattgtatatt 38252095  T
Q  229 ccattcaaaatacaaagtcaatgtatggcagaag 262  Q
    ||||||||||||||||||||||||||||||||||    
T  38252096 ccattcaaaatacaaagtcaatgtatggcagaag 38252129  T

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Target: chr2; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 130 - 262
Target Start/End: Complemental strand, 43157546 - 43157413
Alignment:
Q  130 aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaaaatattgtatatt 228  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43157546 aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaaaatattgtatatt 43157447  T
Q  229 ccattcaaaatacaaagtcaatgtatggcagaag 262  Q
    ||||||||||||||||||||||||||||||||||    
T  43157446 ccattcaaaatacaaagtcaatgtatggcagaag 43157413  T

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Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 30 - 208
Target Start/End: Complemental strand, 11475146 - 11474968
Alignment:
Q  30 caccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatc 129  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11475146 caccagattcagtaaaagctcaaactcctataggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatc 11475047  T
Q  130 aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataacacaattaag 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11475046 aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataacacaattaag 11474968  T

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Target: chr1; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 30 - 208
Target Start/End: Complemental strand, 11503186 - 11503008
Alignment:
Q  30 caccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatc 129  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11503186 caccagattcagtaaaagctcaaactcctattggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatc 11503087  T
Q  130 aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataacacaattaag 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11503086 aagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataacacaattaag 11503008  T

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Target: chr1; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 130 - 262
Target Start/End: Complemental strand, 11474970 - 11474837
Alignment:
Q  130 aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaaaatattgtatatt 228  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11474970 aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaaaatattgtatatt 11474871  T
Q  229 ccattcaaaatacaaagtcaatgtatggcagaag 262  Q
    ||||||||||||||||||||||||||||||||||    
T  11474870 ccattcaaaatacaaagtcaatgtatggcagaag 11474837  T

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Target: chr1; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 130 - 262
Target Start/End: Complemental strand, 11503010 - 11502877
Alignment:
Q  130 aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaaaatattgtatatt 228  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11503010 aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaaaatattgtatatt 11502911  T
Q  229 ccattcaaaatacaaagtcaatgtatggcagaag 262  Q
    ||||||||||||||||||||||||||||||||||    
T  11502910 ccattcaaaatacaaagtcaatgtatggcagaag 11502877  T

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Target: chr1; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 164 - 262
Target Start/End: Original strand, 28245195 - 28245293
Alignment:
Q  164 aaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcagaag 262  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28245195 aaatagaaacaaacaaatgacagaggctgctataacacaattaggctaacaaaatattgtatattccattcaaaatacaaagtcaatgtatggcagaag 28245293  T

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Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 164 - 262
Target Start/End: Original strand, 22490436 - 22490534
Alignment:
Q  164 aaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcagaag 262  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22490436 aaatacaaacgaacaaatgacagaggctgctataacacaattaggctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcagaag 22490534  T

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Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 164 - 262
Target Start/End: Original strand, 19306850 - 19306948
Alignment:
Q  164 aaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcagaag 262  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19306850 aaatagaaacgaacaaatgatagaggctgctataacacaattaggctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcagaag 19306948  T

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Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 164 - 262
Target Start/End: Original strand, 10123422 - 10123520
Alignment:
Q  164 aaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcagaag 262  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10123422 aaatagaaacgaacaaatgatagaggctgctataacacaattaggctaacaaaatattgtatattgcattcaaaatacaaagtcaatgtatggcagaag 10123520  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 18330745 - 18330801
Alignment:
Q  97 agagttaacacacaatccaaaaacaaaagaatcaagatttgttacacactctaaaat 153  Q
    |||||||| |||||||  ||||||||||| ||||| ||||||| ||||| |||||||    
T  18330745 agagttaaaacacaataaaaaaacaaaagcatcaacatttgttgcacacactaaaat 18330801  T

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Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 164 - 260
Target Start/End: Complemental strand, 25382990 - 25382894
Alignment:
Q  164 aaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcaga 260  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25382990 aaatagaatcgaacaaatgacagaggctgctataacacaattaggctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcaga 25382894  T

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Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 164 - 260
Target Start/End: Complemental strand, 48795569 - 48795473
Alignment:
Q  164 aaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcaga 260  Q
    |||||||||||||||||||||||||| || ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  48795569 aaatagaaacgaacaaatgacagaggttgttataacacaattaggctagcacaatattgtatattccattcaaaatacaaagtcaatgtatggcaga 48795473  T

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