View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_250 (Length: 268)
Name: NF9264A_low_250
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_250 |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 24122457 - 24122207
Alignment:
| Q |
18 |
gacatctcatttatctcagttattcattttaagaggtgaatttctaaccaccagactatttgaccaaaaaatgaaattgtgtaaaaactacacccaaaga |
117 |
Q |
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| T |
24122457 |
gacatctcacttatctcagttattcattttaagaggtgaatttctaaccaccagactatttgaccaaaaaatgaaattgtgtaaaaactacacccaaaga |
24122358 |
T |
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| Q |
118 |
aagcatccattttacaagttaataatgatgtattcctaatttgcttatctcaggttaatctgtgatttctatcctatggctgctggaaatttaagtgaat |
217 |
Q |
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| T |
24122357 |
aagcatccattttacaagttaataatgatgtattcctaatttgcttatctcaggttaatctgtgatttctatcctatggctgctggaaatttaagtgaat |
24122258 |
T |
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| Q |
218 |
cagttgaacaaggtgacgaagttaccttgagagtcatggtggacaaagaaa |
268 |
Q |
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| T |
24122257 |
cagttgaacaaggtgacgaagttaccttgagagtcatggtggacaaagaaa |
24122207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 24132693 - 24132642
Alignment:
| Q |
213 |
tgaatcagttgaacaaggtgacgaagttaccttgagagtcatggtggacaaa |
264 |
Q |
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| T |
24132693 |
tgaatcatttgaacaaggtgacaaagttaccttgagagttttggtggacaaa |
24132642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 1861430 - 1861486
Alignment:
| Q |
32 |
ctcagttattcattttaagaggtgaatttctaaccaccagactatttgaccaaaaaa |
88 |
Q |
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| T |
1861430 |
ctcacttattcattttaagaggtgaatttttagccacaagactacttgacaaaaaaa |
1861486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 29484932 - 29484975
Alignment:
| Q |
37 |
ttattcattttaagaggtgaatttctaaccaccagactatttga |
80 |
Q |
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| T |
29484932 |
ttattcattttaagaggtgaatatctagccactagactatttga |
29484975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 24284261 - 24284213
Alignment:
| Q |
37 |
ttattcattttaagaggtgaatttctaaccaccagactatttgaccaaa |
85 |
Q |
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| T |
24284261 |
ttattcattttaagaggtgaatgtctagccactaggctatttgaacaaa |
24284213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 2233170 - 2233224
Alignment:
| Q |
37 |
ttattcattttaagaggtgaatttctaaccaccagactatttgaccaaaaaatga |
91 |
Q |
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| T |
2233170 |
ttattcattttaagagttgaatttttaaccaataaattatttgaccaaaaaatga |
2233224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 3151024 - 3151077
Alignment:
| Q |
215 |
aatcagttgaacaaggtgacgaagttaccttgagagtcatggtggacaaagaaa |
268 |
Q |
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| T |
3151024 |
aatccgttgaacaagttgacaaagttagcttgagaattatggtggacaaagaaa |
3151077 |
T |
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