View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_251 (Length: 268)
Name: NF9264A_low_251
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_251 |
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| [»] chr2 (5 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 268
Target Start/End: Original strand, 2462357 - 2462617
Alignment:
| Q |
8 |
ttggtgttgcaaatattgtttgggacaatactgttgctagttttgcccaagactatgctaatcaacgcaagggtgattgtcaactgatccactccggtgg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462357 |
ttggtgttgcaaatattgtttgggacaatactgttgctagttttgcccaagactatgctaatcaacgcaagggtgattgtcaactgatccactccggtgg |
2462456 |
T |
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| Q |
108 |
tggtggccgttacggggaaaatctggcgtggagctctggcgacatgagtggcacagatgcagtgaggttgtgggtgaatgagaaagctgactatgattat |
207 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2462457 |
tggtggccgttacggggaaaatctagcgtggagctctggcgacatgagtggctcagatgcagtgaagttgtgggtgaatgagaaagctgactatgattat |
2462556 |
T |
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| Q |
208 |
aatagtaacacatgtgcttctggtaaagtgtgtggccattatactcaggttgtttggagaa |
268 |
Q |
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| T |
2462557 |
aatagtaacacatgtgcttctggtaaagtgtgtggccattatacccaggttgtttggagaa |
2462617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 268
Target Start/End: Complemental strand, 3063640 - 3063380
Alignment:
| Q |
8 |
ttggtgttgcaaatattgtttgggacaatactgttgctagttttgcccaagactatgctaatcaacgcaagggtgattgtcaactgatccactccggtgg |
107 |
Q |
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| T |
3063640 |
ttggtgttggagatattgtttgggacaatactgttgctagttttgcccaagactatgctaatcaacgcaagggtgattgtcaactgatccactccggtgg |
3063541 |
T |
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| Q |
108 |
tggtggccgttacggggaaaatctggcgtggagctctggcgacatgagtggcacagatgcagtgaggttgtgggtgaatgagaaagctgactatgattat |
207 |
Q |
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| T |
3063540 |
tggtggccgctacggggaaaatctggcgtggagctctggcgacatgagtggctcagatgcagtgaagttgtgggtgaatgagaaagctgactataattat |
3063441 |
T |
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| Q |
208 |
aatagtaacacatgtgcttctggtaaagtgtgtggccattatactcaggttgtttggagaa |
268 |
Q |
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| T |
3063440 |
aatagtaacacatgtgcttctggtaaagtgtgtggccattatactcaggttgtttggagaa |
3063380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 8 - 268
Target Start/End: Original strand, 2466411 - 2466665
Alignment:
| Q |
8 |
ttggtgttgcaaatattgtttgggacaatactgttgctagttttgcccaagactatgctaatcaacgcaagggtgattgtcaactgatccactccggtgg |
107 |
Q |
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| T |
2466411 |
ttggtgttgcaaatattgtttgggacaatactgttgctagttttgctcaagactaagctaatcaacacaagggtgattgtcaactgatccactccggtg- |
2466509 |
T |
|
| Q |
108 |
tggtggccgttacggggaaaatctggcgtggagctctggcgacatgagtggcacagatgcagtgaggttgtgggtgaatgagaaagctgactatgattat |
207 |
Q |
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| T |
2466510 |
-----gccgttacggggagaatctcgcgggtagcaccggagacttaagtggctcagatgcagtgaagttgtgggtgaatgagaaagctgactatgattat |
2466604 |
T |
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| Q |
208 |
aatagtaacacatgtgcttctggtaaagtgtgtggccattatactcaggttgtttggagaa |
268 |
Q |
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| T |
2466605 |
aatagtaacacatgtgcttctggtaaagtgtgtggccattatacccaggttgtttggagaa |
2466665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 8 - 268
Target Start/End: Original strand, 2457787 - 2458041
Alignment:
| Q |
8 |
ttggtgttgcaaatattgtttgggacaatactgttgctagttttgcccaagactatgctaatcaacgcaagggtgattgtcaactgatccactccggtgg |
107 |
Q |
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|||||||||||||| |||| |||||||||| | |||||| | |||||||| ||||||||||| ||||| ||||||||||| ||||| |||||| |
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| T |
2457787 |
ttggtgttgcaaatgttgtctgggacaataatcttgctactgttgcccaaaactatgctaattcacgcaggggtgattgtcgactgacccactc------ |
2457880 |
T |
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| Q |
108 |
tggtggccgttacggggaaaatctggcgtggagctctggcgacatgagtggcacagatgcagtgaggttgtgggtgaatgagaaagctgactatgattat |
207 |
Q |
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|||||||||||||||||| ||||| || ||||| | || ||| ||||||||||||||||||||||||||||||||||||||||| |||||| | ||| |
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| T |
2457881 |
tggtggccgttacggggagaatctcgcagggagcaccggagacttgagtggcacagatgcagtgaggttgtgggtgaatgagaaaaacgactataactat |
2457980 |
T |
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| Q |
208 |
aatagtaacacatgtgcttctggtaaagtgtgtggccattatactcaggttgtttggagaa |
268 |
Q |
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| T |
2457981 |
aatagtaacacatgtgcttctggtaaagtgtgtggccattacactcaggttgtttggagaa |
2458041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 268
Target Start/End: Original strand, 2469742 - 2469990
Alignment:
| Q |
17 |
caaatattgtttgggacaatactgttgctagttttgcccaagactatgctaatcaacgcaagggtgattgtcaactgatccactccggtggtggtggccg |
116 |
Q |
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||||||||||||||||||| | |||||| |||||| || ||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||| |
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| T |
2469742 |
caaatattgtttgggacaacaaagttgctgcttttgcaaaaaactatgctaatcaacgcaagg---attgtcaactggtccactctggtggtggtggccg |
2469838 |
T |
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| Q |
117 |
ttacggggaaaatctggcgtggagctctggcgacatgagtggcacagatgcagtgaggttgtgggtgaatgagaaagctgactatgattataatagtaac |
216 |
Q |
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|||||| || ||| | ||| |||| ||||| ||||||||||| ||| || |||| |||||||||| |||| ||| | |||||||||||| |||||| |
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| T |
2469839 |
ttacggagagaatatcgcggagagcactggcaacatgagtggcgtagaagcggtgaagttgtgggtggatgaaaaaccctactatgattatagtagtaat |
2469938 |
T |
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| Q |
217 |
acatgtgcttctggtaaagtgtgtggccattatactcaggttgtttggagaa |
268 |
Q |
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|||||||| |||| || |||||||||| || |||||||| |||||||||| |
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| T |
2469939 |
tcatgtgctaatggtgaaatgtgtggccactacactcaggtggtttggagaa |
2469990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 268
Target Start/End: Original strand, 18015680 - 18015940
Alignment:
| Q |
8 |
ttggtgttgcaaatattgtttgggacaatactgttgctagttttgcccaagactatgctaatcaacgcaagggtgattgtcaactgatccactccggtgg |
107 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18015680 |
ttggtgttggagatattgtttgggacaatactgttgctagttttgcccaagactatgctaatcaacgcaagggtgattgtcaactgatccactccggtgg |
18015779 |
T |
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| Q |
108 |
tggtggccgttacggggaaaatctggcgtggagctctggcgacatgagtggcacagatgcagtgaggttgtgggtgaatgagaaagctgactatgattat |
207 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
18015780 |
tggtggccgctacggggaaaatctggcgtggagctctggcgacatgagtggctcagatgcagtgaagttgtgggtgaatgagaaagctgactataattat |
18015879 |
T |
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| Q |
208 |
aatagtaacacatgtgcttctggtaaagtgtgtggccattatactcaggttgtttggagaa |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18015880 |
aatagtaacacatgtgcttctggtaaagtgtgtggccattatactcaggttgtttggagaa |
18015940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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