View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_252 (Length: 268)
Name: NF9264A_low_252
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_252 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 53475084 - 53474929
Alignment:
| Q |
8 |
catagaccaacattaaccaaaagactatctaaccaaacaaagagagggttttac----tacccccactcgtagaaagttcaaggagacccataagactta |
103 |
Q |
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| T |
53475084 |
catagaccaacattaaccaaaagactatctaaccaaacaaagagagggttttacgtactacccccactcgtagaaagttcaaggagacccataagactta |
53474985 |
T |
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| Q |
104 |
cccgaaaaccattttcaaagatagaaactaacgcgatccactgattgctcaaaatt |
159 |
Q |
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| T |
53474984 |
ctcgaaaaccattttcaaagattgaaactaacgcgatccactaattgctcaaaatt |
53474929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 53474929 - 53474858
Alignment:
| Q |
197 |
ttgagatcaaccaaccactctacaaaataccaaaccaaagccaacaaaatcatgagttgagagccacttcaa |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
53474929 |
ttgagatcaaccaaccactctacaaaataccaaaccaaagccaacaaaatcatgaattgagagccacttcaa |
53474858 |
T |
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