View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_256 (Length: 266)
Name: NF9264A_low_256
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_256 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 22 - 262
Target Start/End: Original strand, 30629493 - 30629733
Alignment:
| Q |
22 |
tgtatctttgtattcaacttctagtttgaaggtgcttatgagtttatgctttcttccgattttgtgttgtaaattaaacattttaattttatgctatggt |
121 |
Q |
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| T |
30629493 |
tgtatctttgtattcaacttctagtttgaaggtgcttatgagtttatgctttcttccgattttgtgttgtatattaaacattttaattttatgatatggt |
30629592 |
T |
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| Q |
122 |
tataatgtagattagggaccaatttgtgattggtttgagacttgagtggtaaggaactcgagtactttaaacaagtggtcagaagtttgatttgtgactc |
221 |
Q |
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| T |
30629593 |
tataatgtagattagggaccaacttgtgattggtttgagatttgagtggtaaggaactcgagtactttaaacaagtggtcagaagtttgatttacgactc |
30629692 |
T |
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| Q |
222 |
ttgtatttgaagaaaatctagttggaagagaataatctacc |
262 |
Q |
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| T |
30629693 |
ttgtatttgaagaaaatctaattggaagagaagaatttacc |
30629733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 34329597 - 34329631
Alignment:
| Q |
185 |
actttaaacaagtggtcagaagtttgatttgtgac |
219 |
Q |
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| T |
34329597 |
actttaaacaagtggtcagatgtttgatttgtgac |
34329631 |
T |
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