View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_26 (Length: 442)
Name: NF9264A_low_26
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 20 - 422
Target Start/End: Complemental strand, 40635497 - 40635083
Alignment:
| Q |
20 |
tcagctctttctcaatccactctacgtgcctcgctgtagcccccaaaactgcatactcttcaaccaggaattttgcaaccactgataccacaacatcgac |
119 |
Q |
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| T |
40635497 |
tcagctctttctcaatccattctacgtgcctcgctgtagcccccaaaactgcatactcttcaaccaggaattttgcaaccactgataccacaacatcgac |
40635398 |
T |
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| Q |
120 |
tgcaacgccagcagccatgtgaa--------------ctctgcttaattaatttgtttatcttttggttttggttttccaaatgattaaggaactactct |
205 |
Q |
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| T |
40635397 |
tgcaacgccagcagccatgtgaagtcttctctgctagctctgcttaattaatttgtttatcttttggttttcgttttccaaatgattaaggaactactct |
40635298 |
T |
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| Q |
206 |
tcatgcttccaaccctcctttttgaattttatttgcacacacttttttgtatgataataaaccataaggaaatactttggaatatgaagaagttaggaag |
305 |
Q |
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| T |
40635297 |
tcatgcttccaaccctcctttttgaattttatttgcacacacttttttgtatgataat-aaccataaggaaatactttggaatatgaagaagttaggaag |
40635199 |
T |
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| Q |
306 |
aagaggacaaaacgtgtatgtcctcctaattattaatatcaacatagtccaaaatatcaaagttaagtactttctcttgtctcgtagaagatgacaaaaa |
405 |
Q |
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| T |
40635198 |
aagaggacaaaacgtgtatgtcctcctaattattaatatcaacatagtccaaaa-atcaaagtaaagtactttctcttgtctcgtagaagatgacaaaaa |
40635100 |
T |
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| Q |
406 |
taaaattatacgagtat |
422 |
Q |
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| T |
40635099 |
taaaattatacgagtat |
40635083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 40629638 - 40629728
Alignment:
| Q |
20 |
tcagctctttctcaatccactctacgtgcctcgctgtagcccccaaaactgcatactcttcaaccaggaattttgcaaccactgataccac |
110 |
Q |
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||||||||||||||||||| |||||||| ||||||| | ||||||| || ||||||||||||| ||||| ||| |||||| |||||||||| |
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| T |
40629638 |
tcagctctttctcaatccattctacgtgtctcgctgcatcccccaacaccgcatactcttcaatcaggattttagcaacccctgataccac |
40629728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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