View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9264A_low_261 (Length: 266)
Name: NF9264A_low_261
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_261 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 3698950 - 3698685
Alignment:
| Q |
1 |
actgttactattctcttcattg----taacaaccatatttcaaactatagcaaactaacaaggataatgagttatttaccccttggtgtccatctcaata |
96 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698950 |
actgttactattctcttcattgctggtaacaaccgtattgtaaactatagcaaactaacaaggataatgagttatttaccccttggtgtccatctcaata |
3698851 |
T |
|
| Q |
97 |
aggttcatgttctgcagctgttgaagaatgtggcgagcaatggaaccactgctcttgcagaaatgaggtgggcgactgccattcctctgacttccaccat |
196 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698850 |
aggttcatgttctgcaactgttgaagaatgtggcgagcaatggaaccactgctcttgcagaaatgaggtgggcgactgccattcctctgacttccaccat |
3698751 |
T |
|
| Q |
197 |
aaatcctctggaatgcaccaacaccgagtccacccctcaagtagatcttccttgcaatggaagctg |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698750 |
aaatcctctggaatgcaccaacaccgagtccacccctcaagtagatcttccttgcaatggaagctg |
3698685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 114 - 262
Target Start/End: Complemental strand, 3703777 - 3703629
Alignment:
| Q |
114 |
ctgttgaagaatgtggcgagcaatggaaccactgctcttgcagaaatgaggtgggcgactgccattcctctgacttccaccataaatcctctggaatgca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3703777 |
ctgttgaagaatgtggcgagcaatggaaccactgctcttgcagaaatgaggtgggcgactgccattcctctggcttccaccataaatcctctggaatgca |
3703678 |
T |
|
| Q |
214 |
ccaacaccgagtccacccctcaagtagatcttccttgcaatggaagctg |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3703677 |
ccaacaccgagtccacccctcaagtagatcttccttgcaatggaagctg |
3703629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 3706928 - 3706871
Alignment:
| Q |
82 |
gtgtccatctcaataaggttcatgttctgcagctgttgaagaatgtggcgagcaatgg |
139 |
Q |
| |
|
|||||||| ||||| | || ||||||||||| |||||| |||||||| |||||||||| |
|
|
| T |
3706928 |
gtgtccatttcaatgatgtccatgttctgcaactgttggagaatgtgacgagcaatgg |
3706871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 73 - 263
Target Start/End: Original strand, 15179378 - 15179568
Alignment:
| Q |
73 |
taccccttggtgtccatctcaataaggttcatgttctgcagctgttgaagaatgtggcgagcaatggaaccactgctcttgcagaaatgaggtgggcgac |
172 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||||| || ||||||||||||||| |||||||| | ||||||||||||||||||||| || || |||| |
|
|
| T |
15179378 |
taccccttggtatccatctcgatgaggttcatgttctccaactgttgaagaatgtgacgagcaatagcaccactgctcttgcagaaatggggaggacgac |
15179477 |
T |
|
| Q |
173 |
tgccattcctctgacttccaccataaatcctctggaatgcaccaacaccgagtccacccctcaagtagatcttccttgcaatggaagctga |
263 |
Q |
| |
|
| |||||||||||||| ||||| |||||||||||||||| ||||||||| || || || || | |||||| |||||||| ||||||||||| |
|
|
| T |
15179478 |
ttccattcctctgactcccaccgtaaatcctctggaatgaaccaacaccaagaccgcctcttacgtagattttccttgccatggaagctga |
15179568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University