View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_265 (Length: 265)

Name: NF9264A_low_265
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_265
NF9264A_low_265
[»] chr2 (17 HSPs)
chr2 (15-265)||(9292322-9292572)
chr2 (50-220)||(9283721-9283891)
chr2 (24-244)||(9357586-9357803)
chr2 (42-265)||(9316449-9316672)
chr2 (42-223)||(9329020-9329201)
chr2 (53-244)||(10353553-10353744)
chr2 (44-223)||(9321399-9321578)
chr2 (50-221)||(9060665-9060836)
chr2 (50-114)||(10336273-10336337)
chr2 (50-108)||(8573142-8573200)
chr2 (151-220)||(10372391-10372460)
chr2 (144-220)||(9275044-9275120)
chr2 (52-114)||(10372301-10372363)
chr2 (50-119)||(7115271-7115340)
chr2 (24-109)||(9274915-9275000)
chr2 (57-114)||(10348227-10348284)
chr2 (151-244)||(10348312-10348405)
[»] chr4 (1 HSPs)
chr4 (52-244)||(26575304-26575496)
[»] chr3 (1 HSPs)
chr3 (50-262)||(37462927-37463139)
[»] scaffold0667 (2 HSPs)
scaffold0667 (50-114)||(4912-4976)
scaffold0667 (162-238)||(5018-5094)
[»] chr8 (2 HSPs)
chr8 (50-112)||(41966362-41966424)
chr8 (164-220)||(41966254-41966310)
[»] chr1 (4 HSPs)
chr1 (51-112)||(29467429-29467489)
chr1 (51-109)||(29452955-29453013)
chr1 (51-108)||(29442970-29443027)
chr1 (55-112)||(29423702-29423759)


Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 265
Target Start/End: Original strand, 9292322 - 9292572
Alignment:
Q  15 acctgtggatcaaaagagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9292322 acctgtggatcaaaagagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 9292421  T
Q  115 cacctgcgcgatcaatgttttcagactcaagaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgt 214  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9292422 caccggcgcgatcaatgttttcagactcgagaatgttagggatagcaagagggagaaaagggataatccgatgtttatgagtgttagggttcaagactgt 9292521  T
Q  215 gatttcgttaggggcgtaaggatgcgtgaagcagatttggctattggaaat 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9292522 gatttcgttaggggcgtaaggatgcgtgaagcagatttggctattggaaat 9292572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 50 - 220
Target Start/End: Complemental strand, 9283891 - 9283721
Alignment:
Q  50 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatg 149  Q
    ||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||  |||| ||||||||||||||||| | ||||    
T  9283891 ccaagagattcggaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaatgcatacaccgccgcgttcaatgttttcagactccacaatg 9283792  T
Q  150 ttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttc 220  Q
    |||||||||| ||||||||||||||||||||||| ||||||| | ||||||| |||| ||| |||||||||    
T  9283791 ttagggataggaagagggagaaaagggataatccaatgtttacgggtgttagtgttccagattgtgatttc 9283721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 24 - 244
Target Start/End: Original strand, 9357586 - 9357803
Alignment:
Q  24 tcaaaagagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||   |||    
T  9357586 tcaaaagagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacac---cgc 9357682  T
Q  124 gatcaatgttttcagactcaagaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgtt 223  Q
      ||||||||   |||    |||||||||||||||| ||||||||| |||||||||||   ||||||| |  ||||| ||||| ||| || |||||||||    
T  9357683 cgtcaatgttgaaagatcggagaatgttagggataggaagagggaggaaagggataatgtgatgtttacggatgttatggttccagattgagatttcgtt 9357782  T
Q  224 aggggcgtaaggatgcgtgaa 244  Q
     | ||||| ||||||| ||||    
T  9357783 ggcggcgttaggatgcctgaa 9357803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 42 - 265
Target Start/End: Original strand, 9316449 - 9316672
Alignment:
Q  42 tcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagact 141  Q
    ||||| |||||||| |||||||||||||||||||| || ||| |||||||| ||||||||||||||||||||| |||  ||||||     || ||||| |    
T  9316449 tcggccatccaagaaattctgaggagtttgtaatcacctgttgatggatcaaaaccgaagccgtgaacgcatataccgccgcgattgggtttgtcagatt 9316548  T
Q  142 caagaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgt 241  Q
    ||||||||||||||||||||||||| || ||||||||||| | ||||||| | |||||||||||| ||| |||||||||||| | | ||||||||||| |    
T  9316549 caagaatgttagggatagcaagaggaaggaaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttggcgccgtaaggatgcat 9316648  T
Q  242 gaagcagatttggctattggaaat 265  Q
    |||   |||||| | |||||||||    
T  9316649 gaaagcgatttgaccattggaaat 9316672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 42 - 223
Target Start/End: Original strand, 9329020 - 9329201
Alignment:
Q  42 tcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagact 141  Q
    ||||||||||||| ||||||||||||||||||||| |||| ||| |||||| ||||||| |||||||||||||       |||||  ||||| ||||| |    
T  9329020 tcggctatccaagcgattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataaggagaagcgatggatgttgtcagatt 9329119  T
Q  142 caagaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgtt 223  Q
    ||||||||||||||||||||||||| || ||||||||||| | ||||||| | |||||||||||| ||| ||||||||||||    
T  9329120 caagaatgttagggatagcaagaggtaggaaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgtt 9329201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 244
Target Start/End: Original strand, 10353553 - 10353744
Alignment:
Q  53 agagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatgtta 152  Q
    ||||||||||||||||||||||||||||| ||  | |||| |||||||||| ||||||||||  |   | || | |  ||| ||||| |  |||||||||    
T  10353553 agagattctgaggagtttgtaatcgccggatacagaatcaaaaccgaagccatgaacgcataagcagccacggttagggttgtcagattggagaatgtta 10353652  T
Q  153 gggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaa 244  Q
    ||||||| ||||||||||||||||||||||| ||| ||| | ||||| |||||| | | |||||||||||| ||||||| ||||||||||||    
T  10353653 gggataggaagagggagaaaagggataatccgatgcttacgggtgttggggttccatattgtgatttcgttgggggcgttaggatgcgtgaa 10353744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 223
Target Start/End: Original strand, 9321399 - 9321578
Alignment:
Q  44 ggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgc-gcgatcaatgttttcagactc 142  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||| || |||||||||| | | || |||||  ||||| || || ||    
T  9321399 ggctaaccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaaaccatgaacgcata-agcagcagcgattgatgttgtcggattc 9321497  T
Q  143 aagaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgtt 223  Q
     | ||||| |||||||| |||||| || |||||||| || | ||| ||| ||||| |||||||| ||| ||||||||||||    
T  9321498 cataatgtcagggataggaagaggtaggaaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgtt 9321578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 221
Target Start/End: Complemental strand, 9060836 - 9060665
Alignment:
Q  50 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatg 149  Q
    ||||| |||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| |||  ||||||    ||| ||||| ||   ||||    
T  9060836 ccaagtgattctgaggagtttgtaatcggcggtgaatggatcaaaaccgaagccgtgaacgcatataccgccgcgattggggttgtcagagtcctcaatg 9060737  T
Q  150 ttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcg 221  Q
    |||||||||| |||||||| |||||||||  ||| || |||  | |||||||||||| ||| |||| |||||    
T  9060736 ttagggataggaagagggataaaagggatggtccgatctttgcgggtgttagggttccagattgtggtttcg 9060665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 10336273 - 10336337
Alignment:
Q  50 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 114  Q
    |||||||||||||||||||||||||||| ||| ||||| |||| ||||||| |||||||||||||    
T  10336273 ccaagagattctgaggagtttgtaatcggcggataatgaatcaaaaccgaatccgtgaacgcata 10336337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 8573200 - 8573142
Alignment:
Q  50 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaa 108  Q
    ||||||||||| |||||||||||||||| |||||||| ||||| |||||||||||||||    
T  8573200 ccaagagattcggaggagtttgtaatcggcggttaatagatcaaaaccgaagccgtgaa 8573142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 10372391 - 10372460
Alignment:
Q  151 tagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttc 220  Q
    |||| |||| |||||||||||||||||||| |||||||||| | |||||||||||| ||| |||||||||    
T  10372391 taggaataggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttc 10372460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 9275044 - 9275120
Alignment:
Q  144 agaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttc 220  Q
    ||||||||||| |||| ||||||||||||||||||||||| |||||||   |||||||||||| ||| ||| |||||    
T  9275044 agaatgttaggtataggaagagggagaaaagggataatccgatgtttaccggtgttagggttccagattgtaatttc 9275120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 10372301 - 10372363
Alignment:
Q  52 aagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 114  Q
    ||||||||||||||||||||| |||||||| ||| | |||| |||||||||| ||||||||||    
T  10372301 aagagattctgaggagtttgtgatcgccggataaagaatcaaaaccgaagccatgaacgcata 10372363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 7115340 - 7115271
Alignment:
Q  50 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacct 119  Q
    ||||||||||||||| |||||||||||  | ||||| |||||| ||||||||||||||| ||||| ||||    
T  7115340 ccaagagattctgagaagtttgtaatcatctgttaaaggatcaaaaccgaagccgtgaaagcatagacct 7115271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 9274915 - 9275000
Alignment:
Q  24 tcaaaagagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaac 109  Q
    ||||||||||||||||  || |||| ||| ||||||||||| ||||| |||||||||| ||| |||||| |||| || ||||||||    
T  9274915 tcaaaagagtaatgtatatcagctaaccatgagattctgagaagtttataatcgccggataaaggatcaaaaccaaaaccgtgaac 9275000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 10348227 - 10348284
Alignment:
Q  57 attctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 114  Q
    |||||||||||||||||||| |||| || | ||||| |||||||||||||||||||||    
T  10348227 attctgaggagtttgtaatcaccggatatttgatcaaaaccgaagccgtgaacgcata 10348284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 244
Target Start/End: Original strand, 10348312 - 10348405
Alignment:
Q  151 tagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaa 244  Q
    |||| |||| |||||||||||||||||||||   ||||||| | |||||||||||| ||| ||||||||||||  ||  || ||||||||||||    
T  10348312 taggaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaa 10348405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 52 - 244
Target Start/End: Original strand, 26575304 - 26575496
Alignment:
Q  52 aagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatgtt 151  Q
    |||||||||||||||||||||||||||||| ||| | |||| |||||||||||||||||||||  |   | |||| |  ||| ||||| |  ||||||||    
T  26575304 aagagattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccgtgaacgcataagcagccacgattagggttgtcagattggagaatgtt 26575403  T
Q  152 agggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaa 244  Q
    |||||| | ||||||||||||||||||||||| || ||||   |||| ||||||| ||| || ||||||||| |||||||  |||||||||||    
T  26575404 agggatgggaagagggagaaaagggataatccgatatttaccggtgtaagggttccagattgcgatttcgttgggggcgttgggatgcgtgaa 26575496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 50 - 262
Target Start/End: Original strand, 37462927 - 37463139
Alignment:
Q  50 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatg 149  Q
    |||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||  |   |||| | |  ||| |  || || | ||||    
T  37462927 ccaagagattctgaggagtttgtaatcgccggttaaagaatcaaaaccgaagccgtgaacgcataagcagccgcggttagggttgtttgattccataatg 37463026  T
Q  150 ttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcaga 249  Q
    | ||||| ||  | |||||||||||||||||||  ||||||| | |||||||||||| ||| |||||||||||| | ||||| ||||||||||||   ||    
T  37463027 taagggacaggcatagggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcga 37463126  T
Q  250 tttggctattgga 262  Q
    |||||| ||||||    
T  37463127 tttggccattgga 37463139  T

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Target: scaffold0667 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 4912 - 4976
Alignment:
Q  50 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 114  Q
    |||||||| |||||||| |||||||||||||||||| |||||| |||||||||||||||||||||    
T  4912 ccaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 4976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 5018 - 5094
Alignment:
Q  162 agagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatg 238  Q
    ||||||||||||||||||||   ||||||| |  ||||||||||| ||| |||||||||||| | ||||| ||||||    
T  5018 agagggagaaaagggataatgtgatgtttacggatgttagggttccagattgtgatttcgttggcggcgttaggatg 5094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 41966424 - 41966362
Alignment:
Q  50 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgca 112  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||||||| |||||||||||    
T  41966424 ccaagagattctgaggagtttgtgatcgctggttaatggatcaaaaccgaatccgtgaacgca 41966362  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 41966310 - 41966254
Alignment:
Q  164 agggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttc 220  Q
    |||||||||||||||||||| |||||||    ||||||||||| ||| |||||||||    
T  41966310 agggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 41966254  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 29467489 - 29467429
Alignment:
Q  51 caagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgca 112  Q
    |||||||||||||| |||||||||||  |||||||||||||| |||||||||||||||||||    
T  29467489 caagagattctgag-agtttgtaatcatcggttaatggatcaaaaccgaagccgtgaacgca 29467429  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 29453013 - 29452955
Alignment:
Q  51 caagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaac 109  Q
    ||||||||||||||||||||||||||| || |||| |||||| |||| |||||||||||    
T  29453013 caagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaac 29452955  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 29443027 - 29442970
Alignment:
Q  51 caagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaa 108  Q
    ||||||||||||| |||||||||||||  ||| ||||||||| |||||||||||||||    
T  29443027 caagagattctgatgagtttgtaatcgttggtcaatggatcaaaaccgaagccgtgaa 29442970  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 29423702 - 29423759
Alignment:
Q  55 agattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgca 112  Q
    ||||| ||||||||||||||||  | |||||||||||| |||||||||||| ||||||    
T  29423702 agattgtgaggagtttgtaatcatcagttaatggatcaaaaccgaagccgtaaacgca 29423759  T

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