View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_273 (Length: 263)

Name: NF9264A_low_273
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_273
NF9264A_low_273
[»] chr7 (17 HSPs)
chr7 (56-239)||(31691181-31691352)
chr7 (101-136)||(25507241-25507276)
chr7 (105-138)||(27708934-27708967)
chr7 (106-138)||(22759064-22759096)
chr7 (143-182)||(42656459-42656498)
chr7 (108-138)||(28702639-28702669)
chr7 (102-131)||(657849-657878)
chr7 (149-182)||(2999141-2999174)
chr7 (104-137)||(5369833-5369866)
chr7 (143-180)||(28178913-28178950)
chr7 (104-137)||(36598480-36598513)
chr7 (128-182)||(12110292-12110343)
chr7 (103-131)||(28691979-28692007)
chr7 (110-138)||(31832193-31832221)
chr7 (150-182)||(39591554-39591586)
chr7 (110-138)||(39630264-39630292)
chr7 (102-138)||(46056151-46056187)
[»] chr2 (9 HSPs)
chr2 (140-181)||(33197327-33197368)
chr2 (106-138)||(6772695-6772727)
chr2 (143-182)||(17952788-17952827)
chr2 (143-182)||(31461382-31461421)
chr2 (143-182)||(32098395-32098434)
chr2 (135-182)||(40837515-40837562)
chr2 (108-137)||(10285758-10285787)
chr2 (150-182)||(29633023-29633055)
chr2 (150-182)||(33576681-33576713)
[»] chr8 (15 HSPs)
chr8 (104-182)||(12224986-12225061)
chr8 (108-182)||(26820112-26820182)
chr8 (106-138)||(31167865-31167897)
chr8 (102-133)||(7026607-7026638)
chr8 (143-182)||(14482146-14482185)
chr8 (143-182)||(31915356-31915395)
chr8 (143-182)||(39392748-39392787)
chr8 (150-184)||(29699205-29699239)
chr8 (107-136)||(12291784-12291813)
chr8 (102-138)||(6875639-6875675)
chr8 (150-182)||(8799356-8799388)
chr8 (150-182)||(11119086-11119118)
chr8 (103-131)||(29590107-29590135)
chr8 (150-182)||(40728505-40728537)
chr8 (144-184)||(44348432-44348472)
[»] chr5 (17 HSPs)
chr5 (149-182)||(10280663-10280696)
chr5 (105-138)||(30845200-30845233)
chr5 (101-138)||(36638636-36638673)
chr5 (143-182)||(7096214-7096253)
chr5 (107-138)||(14257346-14257377)
chr5 (143-182)||(37063161-37063200)
chr5 (150-223)||(912696-912768)
chr5 (149-182)||(10303751-10303784)
chr5 (149-182)||(14295456-14295489)
chr5 (149-182)||(28586853-28586886)
chr5 (149-182)||(35095870-35095903)
chr5 (100-128)||(6593173-6593201)
chr5 (150-182)||(29117017-29117049)
chr5 (149-181)||(29590828-29590860)
chr5 (106-138)||(35055092-35055124)
chr5 (106-138)||(35071834-35071866)
chr5 (150-182)||(35135749-35135781)
[»] chr3 (12 HSPs)
chr3 (107-182)||(20192693-20192765)
chr3 (106-138)||(4534499-4534531)
chr3 (142-182)||(49587003-49587043)
chr3 (143-182)||(1395615-1395654)
chr3 (107-138)||(20874458-20874489)
chr3 (143-181)||(905058-905096)
chr3 (104-138)||(8933665-8933699)
chr3 (102-136)||(35952227-35952261)
chr3 (102-131)||(44237384-44237413)
chr3 (150-182)||(26990685-26990717)
chr3 (106-138)||(53892009-53892041)
chr3 (150-182)||(54775079-54775111)
[»] chr1 (14 HSPs)
chr1 (149-182)||(39777613-39777646)
chr1 (106-138)||(6933117-6933149)
chr1 (107-182)||(14737792-14737872)
chr1 (106-138)||(32555703-32555735)
chr1 (104-139)||(4019748-4019783)
chr1 (107-138)||(48146173-48146204)
chr1 (104-138)||(41638453-41638487)
chr1 (140-182)||(46499941-46499983)
chr1 (143-181)||(50319236-50319274)
chr1 (150-182)||(15360845-15360877)
chr1 (150-182)||(36641826-36641858)
chr1 (102-138)||(44375495-44375531)
chr1 (102-138)||(48133097-48133133)
chr1 (150-182)||(49517021-49517053)
[»] scaffold0590 (1 HSPs)
scaffold0590 (143-182)||(1161-1200)
[»] scaffold0275 (1 HSPs)
scaffold0275 (143-182)||(2775-2814)
[»] chr4 (15 HSPs)
chr4 (143-178)||(30338683-30338718)
chr4 (143-182)||(51044546-51044585)
chr4 (151-181)||(9319283-9319313)
chr4 (144-182)||(10192229-10192267)
chr4 (149-182)||(4071832-4071865)
chr4 (109-138)||(7730513-7730542)
chr4 (149-182)||(20936089-20936122)
chr4 (98-131)||(33640980-33641013)
chr4 (109-138)||(41162211-41162240)
chr4 (128-178)||(6364081-6364128)
chr4 (150-182)||(19422369-19422401)
chr4 (106-138)||(24068801-24068833)
chr4 (102-138)||(25309180-25309216)
chr4 (103-131)||(30079536-30079564)
chr4 (107-135)||(52645572-52645600)
[»] scaffold0024 (1 HSPs)
scaffold0024 (104-138)||(23804-23838)
[»] chr6 (7 HSPs)
chr6 (140-181)||(281936-281977)
chr6 (109-138)||(2023787-2023816)
chr6 (149-182)||(30865432-30865465)
chr6 (150-182)||(5328925-5328957)
chr6 (150-182)||(24836286-24836318)
chr6 (102-138)||(30865350-30865386)
chr6 (100-132)||(32975852-32975884)


Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 56 - 239
Target Start/End: Complemental strand, 31691352 - 31691181
Alignment:
Q  56 gttaacaaaagaatgcctcaataataatgcatatacaatattagatgaccctgtttggataaacaacttaattaagcacttatgatctataacctatttc 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31691352 gttaacaaaagaatgcctcaataataatgcatatacaatattagatgactctgtttggataaacaacttaattaagcacttatgatctataacctatttc 31691253  T
Q  156 tataacaaaagatagaataaagtcaaaattcgattccacatgagctataagttgtttttataatctattctagaaagcttgtgg 239  Q
                ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31691252 ------------tagaacaaagtcaaaattcgattccacatgagctataagttgtttttataatctattctagaaagcttgtgg 31691181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 136
Target Start/End: Original strand, 25507241 - 25507276
Alignment:
Q  101 tgaccctgtttggataaacaacttaattaagcactt 136  Q
    ||||||||||||||||||||||||||||||||||||    
T  25507241 tgaccctgtttggataaacaacttaattaagcactt 25507276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 27708967 - 27708934
Alignment:
Q  105 cctgtttggataaacaacttaattaagcacttat 138  Q
    ||||||||||||||||||||||||||||||||||    
T  27708967 cctgtttggataaacaacttaattaagcacttat 27708934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 22759064 - 22759096
Alignment:
Q  106 ctgtttggataaacaacttaattaagcacttat 138  Q
    |||||||||||||||||||||||||||||||||    
T  22759064 ctgtttggataaacaacttaattaagcacttat 22759096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 182
Target Start/End: Original strand, 42656459 - 42656498
Alignment:
Q  143 tataacctatttctataacaaaagatagaataaagtcaaa 182  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  42656459 tataagctatttctataacaaaagataaaataaagtcaaa 42656498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 138
Target Start/End: Original strand, 28702639 - 28702669
Alignment:
Q  108 gtttggataaacaacttaattaagcacttat 138  Q
    |||||||||||||||||||||||||||||||    
T  28702639 gtttggataaacaacttaattaagcacttat 28702669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 131
Target Start/End: Complemental strand, 657878 - 657849
Alignment:
Q  102 gaccctgtttggataaacaacttaattaag 131  Q
    ||||||||||||||||||||||||||||||    
T  657878 gaccctgtttggataaacaacttaattaag 657849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 2999141 - 2999174
Alignment:
Q  149 ctatttctataacaaaagatagaataaagtcaaa 182  Q
    ||||||||||||||||||||| ||||||||||||    
T  2999141 ctatttctataacaaaagataaaataaagtcaaa 2999174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 5369866 - 5369833
Alignment:
Q  104 ccctgtttggataaacaacttaattaagcactta 137  Q
    |||||||||||||||||| |||||||||||||||    
T  5369866 ccctgtttggataaacaatttaattaagcactta 5369833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 180
Target Start/End: Original strand, 28178913 - 28178950
Alignment:
Q  143 tataacctatttctataacaaaagatagaataaagtca 180  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  28178913 tataagctatttctataacaaaagataaaataaagtca 28178950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 36598513 - 36598480
Alignment:
Q  104 ccctgtttggataaacaacttaattaagcactta 137  Q
    |||||||||||||||||||||||||||| |||||    
T  36598513 ccctgtttggataaacaacttaattaagaactta 36598480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 12110292 - 12110343
Alignment:
Q  128 taagcacttatgatctataacctatttctataacaaaagatagaataaagtcaaa 182  Q
    |||||||||||||   ||||||||||||||| ||| |||||| ||||||||||||    
T  12110292 taagcacttatga---ataacctatttctattacacaagataaaataaagtcaaa 12110343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 131
Target Start/End: Complemental strand, 28692007 - 28691979
Alignment:
Q  103 accctgtttggataaacaacttaattaag 131  Q
    |||||||||||||||||||||||||||||    
T  28692007 accctgtttggataaacaacttaattaag 28691979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 138
Target Start/End: Original strand, 31832193 - 31832221
Alignment:
Q  110 ttggataaacaacttaattaagcacttat 138  Q
    |||||||||||||||||||||||||||||    
T  31832193 ttggataaacaacttaattaagcacttat 31832221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 39591586 - 39591554
Alignment:
Q  150 tatttctataacaaaagatagaataaagtcaaa 182  Q
    |||||||||||||||||||| ||||||||||||    
T  39591586 tatttctataacaaaagataaaataaagtcaaa 39591554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 138
Target Start/End: Original strand, 39630264 - 39630292
Alignment:
Q  110 ttggataaacaacttaattaagcacttat 138  Q
    |||||||||||||||||||||||||||||    
T  39630264 ttggataaacaacttaattaagcacttat 39630292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 46056187 - 46056151
Alignment:
Q  102 gaccctgtttggataaacaacttaattaagcacttat 138  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  46056187 gaccatgtttggataaacaacttaattaagcatttat 46056151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 33197368 - 33197327
Alignment:
Q  140 atctataacctatttctataacaaaagatagaataaagtcaa 181  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  33197368 atctataagctatttctataacaaaagatagaataaagtcaa 33197327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 6772727 - 6772695
Alignment:
Q  106 ctgtttggataaacaacttaattaagcacttat 138  Q
    |||||||||||||||||||||||||||||||||    
T  6772727 ctgtttggataaacaacttaattaagcacttat 6772695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 17952827 - 17952788
Alignment:
Q  143 tataacctatttctataacaaaagatagaataaagtcaaa 182  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  17952827 tataagctatttctataacaaaagataaaataaagtcaaa 17952788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 182
Target Start/End: Original strand, 31461382 - 31461421
Alignment:
Q  143 tataacctatttctataacaaaagatagaataaagtcaaa 182  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  31461382 tataagctatttctataacaaaagataaaataaagtcaaa 31461421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 32098434 - 32098395
Alignment:
Q  143 tataacctatttctataacaaaagatagaataaagtcaaa 182  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  32098434 tataagctatttctataacaaaagataaaataaagtcaaa 32098395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 40837562 - 40837515
Alignment:
Q  135 ttatgatctataacctatttctataacaaaagatagaataaagtcaaa 182  Q
    ||||||| ||||| ||||||||||||||||||||| | ||||||||||    
T  40837562 ttatgatgtataagctatttctataacaaaagataaattaaagtcaaa 40837515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 137
Target Start/End: Original strand, 10285758 - 10285787
Alignment:
Q  108 gtttggataaacaacttaattaagcactta 137  Q
    ||||||||||||||||||||||||||||||    
T  10285758 gtttggataaacaacttaattaagcactta 10285787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 29633023 - 29633055
Alignment:
Q  150 tatttctataacaaaagatagaataaagtcaaa 182  Q
    |||||||||||||||| ||||||||||||||||    
T  29633023 tatttctataacaaaaaatagaataaagtcaaa 29633055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 33576713 - 33576681
Alignment:
Q  150 tatttctataacaaaagatagaataaagtcaaa 182  Q
    |||||||||||||||||||| ||||||||||||    
T  33576713 tatttctataacaaaagatacaataaagtcaaa 33576681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 182
Target Start/End: Complemental strand, 12225061 - 12224986
Alignment:
Q  104 ccctgtttggataaacaacttaattaagcacttatgatctataacctatttctataacaaaagatagaataaagtcaaa 182  Q
    ||||||||||||||||||||||||||||  ||||||   |||||  ||||||||  |||||||||| ||||||||||||    
T  12225061 ccctgtttggataaacaacttaattaagagcttatg---tataagttatttctaagacaaaagataaaataaagtcaaa 12224986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 26820112 - 26820182
Alignment:
Q  108 gtttggataaacaacttaattaagcacttatgatctataacctatttctataacaaaagatagaataaagtcaaa 182  Q
    |||||||||||||||| |||||||| ||||     |||||  |||||||||||||||||||| ||||||||||||    
T  26820112 gtttggataaacaactcaattaagcgcttag----tataagttatttctataacaaaagataaaataaagtcaaa 26820182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 31167865 - 31167897
Alignment:
Q  106 ctgtttggataaacaacttaattaagcacttat 138  Q
    |||||||||||||||||||||||||||||||||    
T  31167865 ctgtttggataaacaacttaattaagcacttat 31167897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 133
Target Start/End: Original strand, 7026607 - 7026638
Alignment:
Q  102 gaccctgtttggataaacaacttaattaagca 133  Q
    ||||||||||||||||||||||||||||||||    
T  7026607 gaccctgtttggataaacaacttaattaagca 7026638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 182
Target Start/End: Original strand, 14482146 - 14482185
Alignment:
Q  143 tataacctatttctataacaaaagatagaataaagtcaaa 182  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  14482146 tataaactatttctataacaaaagataaaataaagtcaaa 14482185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 31915395 - 31915356
Alignment:
Q  143 tataacctatttctataacaaaagatagaataaagtcaaa 182  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  31915395 tataagctatatctataacaaaagatagaataaagtcaaa 31915356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 39392787 - 39392748
Alignment:
Q  143 tataacctatttctataacaaaagatagaataaagtcaaa 182  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  39392787 tataaactatttctataacaaaagataaaataaagtcaaa 39392748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 29699205 - 29699239
Alignment:
Q  150 tatttctataacaaaagatagaataaagtcaaaat 184  Q
    |||||||||||||||||||| ||||||||||||||    
T  29699205 tatttctataacaaaagataaaataaagtcaaaat 29699239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 136
Target Start/End: Complemental strand, 12291813 - 12291784
Alignment:
Q  107 tgtttggataaacaacttaattaagcactt 136  Q
    ||||||||||||||||||||||||||||||    
T  12291813 tgtttggataaacaacttaattaagcactt 12291784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 6875675 - 6875639
Alignment:
Q  102 gaccctgtttggataaacaacttaattaagcacttat 138  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  6875675 gaccatgtttggataaaccacttaattaagcacttat 6875639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 8799356 - 8799388
Alignment:
Q  150 tatttctataacaaaagatagaataaagtcaaa 182  Q
    |||||||||||||||||||| ||||||||||||    
T  8799356 tatttctataacaaaagataaaataaagtcaaa 8799388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 11119118 - 11119086
Alignment:
Q  150 tatttctataacaaaagatagaataaagtcaaa 182  Q
    |||||||||||||||||||| ||||||||||||    
T  11119118 tatttctataacaaaagataaaataaagtcaaa 11119086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 131
Target Start/End: Complemental strand, 29590135 - 29590107
Alignment:
Q  103 accctgtttggataaacaacttaattaag 131  Q
    |||||||||||||||||||||||||||||    
T  29590135 accctgtttggataaacaacttaattaag 29590107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 40728537 - 40728505
Alignment:
Q  150 tatttctataacaaaagatagaataaagtcaaa 182  Q
    |||||||||||||||||||| ||||||||||||    
T  40728537 tatttctataacaaaagataaaataaagtcaaa 40728505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 44348432 - 44348472
Alignment:
Q  144 ataacctatttctataacaaaagatagaataaagtcaaaat 184  Q
    |||| ||||||||||||||||||||  ||||||||||||||    
T  44348432 ataagctatttctataacaaaagatgtaataaagtcaaaat 44348472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 10280696 - 10280663
Alignment:
Q  149 ctatttctataacaaaagatagaataaagtcaaa 182  Q
    ||||||||||||||||||||||||||||||||||    
T  10280696 ctatttctataacaaaagatagaataaagtcaaa 10280663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 30845200 - 30845233
Alignment:
Q  105 cctgtttggataaacaacttaattaagcacttat 138  Q
    ||||||||||||||||||||||||||||||||||    
T  30845200 cctgtttggataaacaacttaattaagcacttat 30845233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 36638636 - 36638673
Alignment:
Q  101 tgaccctgtttggataaacaacttaattaagcacttat 138  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  36638636 tgaccctatttggataaacaacttaattaagcacttat 36638673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 7096253 - 7096214
Alignment:
Q  143 tataacctatttctataacaaaagatagaataaagtcaaa 182  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  7096253 tataagctatttctataacaaaagataaaataaagtcaaa 7096214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 138
Target Start/End: Original strand, 14257346 - 14257377
Alignment:
Q  107 tgtttggataaacaacttaattaagcacttat 138  Q
    ||||||||||||||||||||||||||||||||    
T  14257346 tgtttggataaacaacttaattaagcacttat 14257377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 37063200 - 37063161
Alignment:
Q  143 tataacctatttctataacaaaagatagaataaagtcaaa 182  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  37063200 tataaactatttctataacaaaagataaaataaagtcaaa 37063161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 912768 - 912696
Alignment:
Q  150 tatttctataacaaaagatagaataaagtcaaaattcgattccacatgagctataagttgtttttataatctat 223  Q
    ||||||||||||| || ||| ||||||||||||||| | || || || ||| ||||||||||||||||| ||||    
T  912768 tatttctataacacaatataaaataaagtcaaaatt-gttttcatataagcaataagttgtttttataaactat 912696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 10303751 - 10303784
Alignment:
Q  149 ctatttctataacaaaagatagaataaagtcaaa 182  Q
    ||||||||||||||||||||| ||||||||||||    
T  10303751 ctatttctataacaaaagataaaataaagtcaaa 10303784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 14295456 - 14295489
Alignment:
Q  149 ctatttctataacaaaagatagaataaagtcaaa 182  Q
    ||||||||||||||||||||| ||||||||||||    
T  14295456 ctatttctataacaaaagataaaataaagtcaaa 14295489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 28586886 - 28586853
Alignment:
Q  149 ctatttctataacaaaagatagaataaagtcaaa 182  Q
    ||||||||||||||||||||| ||||||||||||    
T  28586886 ctatttctataacaaaagataaaataaagtcaaa 28586853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 35095903 - 35095870
Alignment:
Q  149 ctatttctataacaaaagatagaataaagtcaaa 182  Q
    ||||||||||||||||||||| ||||||||||||    
T  35095903 ctatttctataacaaaagataaaataaagtcaaa 35095870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 6593173 - 6593201
Alignment:
Q  100 atgaccctgtttggataaacaacttaatt 128  Q
    |||||||||||||||||||||||||||||    
T  6593173 atgaccctgtttggataaacaacttaatt 6593201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 29117049 - 29117017
Alignment:
Q  150 tatttctataacaaaagatagaataaagtcaaa 182  Q
    |||||||||||||||||||| ||||||||||||    
T  29117049 tatttctataacaaaagataaaataaagtcaaa 29117017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 181
Target Start/End: Complemental strand, 29590860 - 29590828
Alignment:
Q  149 ctatttctataacaaaagatagaataaagtcaa 181  Q
    ||||||||||||||||||||| |||||||||||    
T  29590860 ctatttctataacaaaagataaaataaagtcaa 29590828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 35055092 - 35055124
Alignment:
Q  106 ctgtttggataaacaacttaattaagcacttat 138  Q
    |||||||| ||||||||||||||||||||||||    
T  35055092 ctgtttgggtaaacaacttaattaagcacttat 35055124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 35071834 - 35071866
Alignment:
Q  106 ctgtttggataaacaacttaattaagcacttat 138  Q
    |||||||| ||||||||||||||||||||||||    
T  35071834 ctgtttgggtaaacaacttaattaagcacttat 35071866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 35135781 - 35135749
Alignment:
Q  150 tatttctataacaaaagatagaataaagtcaaa 182  Q
    |||||||||||||||||||| ||||||||||||    
T  35135781 tatttctataacaaaagataaaataaagtcaaa 35135749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 20192765 - 20192693
Alignment:
Q  107 tgtttggataaacaacttaattaagcacttatgatctataacctatttctataacaaaagatagaataaagtcaaa 182  Q
    |||||||||||||| || |||||||  ||||||   ||||| |||||| |||||||||||||| ||||||||||||    
T  20192765 tgtttggataaacagctcaattaagtgcttatg---tataagctatttatataacaaaagataaaataaagtcaaa 20192693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 4534531 - 4534499
Alignment:
Q  106 ctgtttggataaacaacttaattaagcacttat 138  Q
    |||||||||||||||||||||||||||||||||    
T  4534531 ctgtttggataaacaacttaattaagcacttat 4534499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 49587043 - 49587003
Alignment:
Q  142 ctataacctatttctataacaaaagatagaataaagtcaaa 182  Q
    |||||| ||||||||||||||||||||| ||||||||||||    
T  49587043 ctataagctatttctataacaaaagataaaataaagtcaaa 49587003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 182
Target Start/End: Original strand, 1395615 - 1395654
Alignment:
Q  143 tataacctatttctataacaaaagatagaataaagtcaaa 182  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  1395615 tataagctatttctataacaaaagataaaataaagtcaaa 1395654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 138
Target Start/End: Complemental strand, 20874489 - 20874458
Alignment:
Q  107 tgtttggataaacaacttaattaagcacttat 138  Q
    ||||||||||||||||||||||||||||||||    
T  20874489 tgtttggataaacaacttaattaagcacttat 20874458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 905096 - 905058
Alignment:
Q  143 tataacctatttctataacaaaagatagaataaagtcaa 181  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  905096 tataagctatttctataacaaaagataaaataaagtcaa 905058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 138
Target Start/End: Original strand, 8933665 - 8933699
Alignment:
Q  104 ccctgtttggataaacaacttaattaagcacttat 138  Q
    |||| ||||||||||||||||||||||||||||||    
T  8933665 ccctatttggataaacaacttaattaagcacttat 8933699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 136
Target Start/End: Complemental strand, 35952261 - 35952227
Alignment:
Q  102 gaccctgtttggataaacaacttaattaagcactt 136  Q
    |||||||||||||||||||| ||||||||||||||    
T  35952261 gaccctgtttggataaacaagttaattaagcactt 35952227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 131
Target Start/End: Original strand, 44237384 - 44237413
Alignment:
Q  102 gaccctgtttggataaacaacttaattaag 131  Q
    ||||||||||||||||||||||||||||||    
T  44237384 gaccctgtttggataaacaacttaattaag 44237413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 26990685 - 26990717
Alignment:
Q  150 tatttctataacaaaagatagaataaagtcaaa 182  Q
    |||||||||||||||||||| ||||||||||||    
T  26990685 tatttctataacaaaagataaaataaagtcaaa 26990717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 53892041 - 53892009
Alignment:
Q  106 ctgtttggataaacaacttaattaagcacttat 138  Q
    ||||||||||||||| |||||||||||||||||    
T  53892041 ctgtttggataaacagcttaattaagcacttat 53892009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 54775079 - 54775111
Alignment:
Q  150 tatttctataacaaaagatagaataaagtcaaa 182  Q
    |||||||||||||||||||| ||||||||||||    
T  54775079 tatttctataacaaaagataaaataaagtcaaa 54775111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 39777613 - 39777646
Alignment:
Q  149 ctatttctataacaaaagatagaataaagtcaaa 182  Q
    ||||||||||||||||||||||||||||||||||    
T  39777613 ctatttctataacaaaagatagaataaagtcaaa 39777646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 6933149 - 6933117
Alignment:
Q  106 ctgtttggataaacaacttaattaagcacttat 138  Q
    |||||||||||||||||||||||||||||||||    
T  6933149 ctgtttggataaacaacttaattaagcacttat 6933117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 14737872 - 14737792
Alignment:
Q  107 tgtttggataaacaacttaattaagcacttatgatctat-----aacctatttctataacaaaagatagaataaagtcaaa 182  Q
    ||||||||||| || ||||||||||||||||| || |||     ||  |||||||||||||||||||| ||||||||||||    
T  14737872 tgtttggataagcagcttaattaagcacttatcatatatgtgctaagttatttctataacaaaagataaaataaagtcaaa 14737792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 32555703 - 32555735
Alignment:
Q  106 ctgtttggataaacaacttaattaagcacttat 138  Q
    |||||||||||||||||||||||||||||||||    
T  32555703 ctgtttggataaacaacttaattaagcacttat 32555735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 139
Target Start/End: Complemental strand, 4019783 - 4019748
Alignment:
Q  104 ccctgtttggataaacaacttaattaagcacttatg 139  Q
    ||||||||||||||||||||||||| ||||||||||    
T  4019783 ccctgtttggataaacaacttaatttagcacttatg 4019748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 138
Target Start/End: Complemental strand, 48146204 - 48146173
Alignment:
Q  107 tgtttggataaacaacttaattaagcacttat 138  Q
    ||||||||||||||||||||||||||||||||    
T  48146204 tgtttggataaacaacttaattaagcacttat 48146173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 138
Target Start/End: Complemental strand, 41638487 - 41638453
Alignment:
Q  104 ccctgtttggataaacaacttaattaagcacttat 138  Q
    ||||||||||||||||||||| |||||||||||||    
T  41638487 ccctgtttggataaacaacttgattaagcacttat 41638453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 46499983 - 46499941
Alignment:
Q  140 atctataacctatttctataacaaaagatagaataaagtcaaa 182  Q
    |||||||| |||||||||||| |||||||| ||||||||||||    
T  46499983 atctataagctatttctataagaaaagataaaataaagtcaaa 46499941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 50319236 - 50319274
Alignment:
Q  143 tataacctatttctataacaaaagatagaataaagtcaa 181  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  50319236 tataagctatttctataacaaaagataaaataaagtcaa 50319274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 15360845 - 15360877
Alignment:
Q  150 tatttctataacaaaagatagaataaagtcaaa 182  Q
    |||||||||||||||||||| ||||||||||||    
T  15360845 tatttctataacaaaagataaaataaagtcaaa 15360877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 36641826 - 36641858
Alignment:
Q  150 tatttctataacaaaagatagaataaagtcaaa 182  Q
    |||||||||||||||||||| ||||||||||||    
T  36641826 tatttctataacaaaagataaaataaagtcaaa 36641858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 44375531 - 44375495
Alignment:
Q  102 gaccctgtttggataaacaacttaattaagcacttat 138  Q
    |||||||||||||||||||  ||||||||||||||||    
T  44375531 gaccctgtttggataaacagtttaattaagcacttat 44375495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 48133133 - 48133097
Alignment:
Q  102 gaccctgtttggataaacaacttaattaagcacttat 138  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  48133133 gaccctgtttggatagacaacttaattaagcgcttat 48133097  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 49517021 - 49517053
Alignment:
Q  150 tatttctataacaaaagatagaataaagtcaaa 182  Q
    |||||||||||||||||||| ||||||||||||    
T  49517021 tatttctataacaaaagataaaataaagtcaaa 49517053  T

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Target: scaffold0590 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 1200 - 1161
Alignment:
Q  143 tataacctatttctataacaaaagatagaataaagtcaaa 182  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  1200 tataagctatttctataacaaaagataaaataaagtcaaa 1161  T

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Target: scaffold0275 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 182
Target Start/End: Original strand, 2775 - 2814
Alignment:
Q  143 tataacctatttctataacaaaagatagaataaagtcaaa 182  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  2775 tataagctatttctataacaaaagataaaataaagtcaaa 2814  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 178
Target Start/End: Complemental strand, 30338718 - 30338683
Alignment:
Q  143 tataacctatttctataacaaaagatagaataaagt 178  Q
    ||||| ||||||||||||||||||||||||||||||    
T  30338718 tataaactatttctataacaaaagatagaataaagt 30338683  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 51044585 - 51044546
Alignment:
Q  143 tataacctatttctataacaaaagatagaataaagtcaaa 182  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  51044585 tataagctatttctataacaaaagataaaataaagtcaaa 51044546  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 181
Target Start/End: Complemental strand, 9319313 - 9319283
Alignment:
Q  151 atttctataacaaaagatagaataaagtcaa 181  Q
    |||||||||||||||||||||||||||||||    
T  9319313 atttctataacaaaagatagaataaagtcaa 9319283  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Original strand, 10192229 - 10192267
Alignment:
Q  144 ataacctatttctataacaaaagatagaataaagtcaaa 182  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  10192229 ataaactatttttataacaaaagatagaataaagtcaaa 10192267  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 4071832 - 4071865
Alignment:
Q  149 ctatttctataacaaaagatagaataaagtcaaa 182  Q
    ||||||||||||||||||||| ||||||||||||    
T  4071832 ctatttctataacaaaagataaaataaagtcaaa 4071865  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 138
Target Start/End: Original strand, 7730513 - 7730542
Alignment:
Q  109 tttggataaacaacttaattaagcacttat 138  Q
    ||||||||||||||||||||||||||||||    
T  7730513 tttggataaacaacttaattaagcacttat 7730542  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 20936122 - 20936089
Alignment:
Q  149 ctatttctataacaaaagatagaataaagtcaaa 182  Q
    ||||||||||||||||||||| ||||||||||||    
T  20936122 ctatttctataacaaaagataaaataaagtcaaa 20936089  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 131
Target Start/End: Original strand, 33640980 - 33641013
Alignment:
Q  98 agatgaccctgtttggataaacaacttaattaag 131  Q
    ||||||||||||||||||||||| ||||||||||    
T  33640980 agatgaccctgtttggataaacagcttaattaag 33641013  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 138
Target Start/End: Complemental strand, 41162240 - 41162211
Alignment:
Q  109 tttggataaacaacttaattaagcacttat 138  Q
    ||||||||||||||||||||||||||||||    
T  41162240 tttggataaacaacttaattaagcacttat 41162211  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 6364081 - 6364128
Alignment:
Q  128 taagcacttatgatctataacctatttctataacaaaagatagaataaagt 178  Q
    ||||||||||||   ||||| ||||||||||||||||||||| ||||||||    
T  6364081 taagcacttatg---tataagctatttctataacaaaagataaaataaagt 6364128  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 19422369 - 19422401
Alignment:
Q  150 tatttctataacaaaagatagaataaagtcaaa 182  Q
    |||||||||||||||||||| ||||||||||||    
T  19422369 tatttctataacaaaagatataataaagtcaaa 19422401  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 24068833 - 24068801
Alignment:
Q  106 ctgtttggataaacaacttaattaagcacttat 138  Q
    |||||||||||| ||||||||||||||||||||    
T  24068833 ctgtttggataatcaacttaattaagcacttat 24068801  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 25309180 - 25309216
Alignment:
Q  102 gaccctgtttggataaacaacttaattaagcacttat 138  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  25309180 gaccctgttaggataaacaacttaattaagcatttat 25309216  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 131
Target Start/End: Complemental strand, 30079564 - 30079536
Alignment:
Q  103 accctgtttggataaacaacttaattaag 131  Q
    |||||||||||||||||||||||||||||    
T  30079564 accctgtttggataaacaacttaattaag 30079536  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 135
Target Start/End: Original strand, 52645572 - 52645600
Alignment:
Q  107 tgtttggataaacaacttaattaagcact 135  Q
    |||||||||||||||||||||||||||||    
T  52645572 tgtttggataaacaacttaattaagcact 52645600  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 138
Target Start/End: Original strand, 23804 - 23838
Alignment:
Q  104 ccctgtttggataaacaacttaattaagcacttat 138  Q
    ||||||||||||||||||||||||||| |||||||    
T  23804 ccctgtttggataaacaacttaattaaacacttat 23838  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 281977 - 281936
Alignment:
Q  140 atctataacctatttctataacaaaagatagaataaagtcaa 181  Q
    |||||||| ||||| ||||||||||||||| |||||||||||    
T  281977 atctataagctattcctataacaaaagataaaataaagtcaa 281936  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 138
Target Start/End: Complemental strand, 2023816 - 2023787
Alignment:
Q  109 tttggataaacaacttaattaagcacttat 138  Q
    ||||||||||||||||||||||||||||||    
T  2023816 tttggataaacaacttaattaagcacttat 2023787  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 30865432 - 30865465
Alignment:
Q  149 ctatttctataacaaaagatagaataaagtcaaa 182  Q
    ||||||||||||||||||||| ||||||||||||    
T  30865432 ctatttctataacaaaagataaaataaagtcaaa 30865465  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 5328925 - 5328957
Alignment:
Q  150 tatttctataacaaaagatagaataaagtcaaa 182  Q
    |||||||||||||||||||| ||||||||||||    
T  5328925 tatttctataacaaaagataaaataaagtcaaa 5328957  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 24836318 - 24836286
Alignment:
Q  150 tatttctataacaaaagatagaataaagtcaaa 182  Q
    |||||||||||||||||||| ||||||||||||    
T  24836318 tatttctataacaaaagataaaataaagtcaaa 24836286  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 30865350 - 30865386
Alignment:
Q  102 gaccctgtttggataaacaacttaattaagcacttat 138  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  30865350 gaccgtgtttggataaacaacttaattaagcatttat 30865386  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 32975852 - 32975884
Alignment:
Q  100 atgaccctgtttggataaacaacttaattaagc 132  Q
    |||||||||||| ||||||||||||||||||||    
T  32975852 atgaccctgtttagataaacaacttaattaagc 32975884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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